Gene omics information

Query gene ID	Contig7620_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7620_at	Contig7620	-	-	1e-11	At2g01060	myb family transcription factor	S.X.	H.G.	Please select
0.71	87.1	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	S.X.	H.G.	Please select
0.64	80.9	Contig5248_s_at	Contig5248	-	-	4e+0	At5g34882	-	S.X.	H.G.	Please select
0.62	79.1	Contig4880_x_at	Contig4880	-	-	2e-20	At1g61800	GPT2	S.X.	H.G.	Please select
0.61	78.7	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	S.X.	H.G.	Please select
0.61	78.7	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.61	78.7	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.60	77.3	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	S.X.	H.G.	Please select
0.57	74.9	Contig5246_s_at	Contig5246	-	-	3e-13	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please select
0.54	70.3	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.6	95.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	44	Contig10555_at	Contig10555	-	-	9e-3	At2g01060	myb family transcription factor	C.G.	S.X.	Please select
0.04	2e-2	40	Contig14642_at	Contig14642	-	-	1e-2	At2g01060	myb family transcription factor	C.G.	S.X.	Please select
0.02	2e-2	40	Contig8253_at	Contig8253	-	-	2e-3	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9160_s_at	Contig9160	-	-	1e-41	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9160_at	Contig9160	-	-	1e-41	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig9161_at	Contig9161	-	-	1e-31	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23531_at	Contig23531	-	-	2e-2	At1g13300	myb family transcription factor	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4336_at	Contig4336	-	-	7e+0	At5g56075	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	C.G.	S.X.	Please select
0.02	5e+0	32	HV10C10u_at	HV10C10u	-	-	4e+0	At1g61795	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-11	71	Arabidopsis thaliana	At2g01060	814630	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-9	63	Glycine max	GmaAffx.71830.1.S1_at	CA783270	-	-	2e-4	At3g04450	transcription factor	C.G.	S.X.	Please select
0.40	1e-139	498	Oryza sativa	Os09g0299200	AK103241.1	-	Transfactor-like protein	4e-18	At2g01060	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-9	63	Populus trichocarpa	PtpAffx.213627.1.S1_s_at	pmrna26615	hypothetical protein	-	1e-5	At2g01060	myb family transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	1721	Triticum aestivum	Ta.4603.1.S1_at	BQ802220	-	-	9e-10	At2g01060	myb family transcription factor	C.G.	S.X.	Please select
0.10	6e-14	77	Vitis vinifera	1617673_at	CB003675	-	-	3e-23	At2g01060	myb family transcription factor	C.G.	S.X.	Please select
0.30	3e-112	404	Zea mays	Zm.6530.1.A1_at	BM269488	MYB-CC type transfactor	-	4e-18	At2g01060	myb family transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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