Gene omics information

Query gene ID	Contig7600_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig7600_at	Contig7600	-	-	2e-1	At5g41570	WRKY24	S.X.	H.G.	Please select
0.67	84.7	Contig2867_at	Contig2867	-	-	8e-14	At5g01320	pyruvate decarboxylase, putative	S.X.	H.G.	Please select
0.57	74.9	Contig17502_at	Contig17502	-	-	2e+0	At4g03965	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.50	66.9	Contig6716_at	Contig6716	-	-	2e-25	At4g31780	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	S.X.	H.G.	Please select
0.50	66.9	Contig11272_at	Contig11272	-	-	8e-2	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select
0.28	35.5	Contig9716_at	Contig9716	-	-	3e-6	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.0	97.2	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.6	96.8	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM311252	28-4_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig11031_at	Contig11031	-	-	3e-3	At5g67470	formin homology 2 domain-containing protein / FH2 domain-containing protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9645_at	Contig9645	-	-	4e-11	At4g26470	calcium ion binding	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9121_at	Contig9121	-	-	3e-6	At3g01550	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig16002_at	Contig16002	-	-	2e+0	At4g31800	WRKY18	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3972_at	Contig3972	-	-	7e-7	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select
0.02	2e+0	34	HA05k01r_at	HA05k01r	-	-	5e-1	At1g29610	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5448_at	Contig5448	-	-	1e+0	At5g57000	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At5g41570	834159	WRKY24	member of WRKY Transcription Factor; Group II-c	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.C45000069_at	PsAffx.C45000069	-	-	5e-1	At3g05990	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.64	0	882	Oryza sativa	Os08g0276100	AK105984.1	-	Conserved hypothetical protein	9e-1	At5g42790	PAF1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.151826.1.A1_at	BP934510	-	-	2e-5	At1g15980	NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	2068	Triticum aestivum	Ta.981.1.S1_at	CD884037	-	-	3e+0	At1g15980	NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1618288_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.61	0	777	Zea mays	Zm.743.1.S1_at	BG321150	hypothetical protein LOC100275158	-	5e-2	At5g65360	histone H3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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