Gene omics information

Query gene ID	Contig7593_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	89.8	Contig7593_at	Contig7593	-	-	6e-7	At3g61070	PEX11E	S.X.	H.G.	Please select
0.90	95.7	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.89	95.4	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	S.X.	H.G.	Please select
0.86	94.8	Contig7103_s_at	Contig7103	-	-	3e-16	At3g21430	-	S.X.	H.G.	Please select
0.84	94.3	Contig828_s_at	Contig828	-	-	1e-26	At2g34430	LHB1B1	S.X.	H.G.	Please select
0.84	94.3	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	S.X.	H.G.	Please select
0.82	93.1	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select
0.78	91.2	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	S.X.	H.G.	Please select
0.64	80.9	Contig6595_at	Contig6595	-	-	2e+0	At1g12440	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select
0.59	75.8	Contig10203_at	Contig10203	-	-	2e+0	At1g17190	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.3	100.0	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
36.1	99.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
34.6	99.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.1	99.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.4	99.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.2	99.5	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.3	99.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	9e-57	220	HS16L14r_x_at	HS16L14r	-	-	3e-1	At2g40650	pre-mRNA splicing factor PRP38 family protein	C.G.	S.X.	Please select
0.21	9e-57	220	HS16L14r_s_at	HS16L14r	-	-	3e-1	At2g40650	pre-mRNA splicing factor PRP38 family protein	C.G.	S.X.	Please select
0.02	3e-1	36	HVSMEk0006L08r2_s_at	HVSMEk0006L08r2	-	-	3e+0	Atmg00370	-	C.G.	S.X.	Please select
0.01	3e-1	36	Contig6484_at	Contig6484	-	-	2e-1	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4010_at	Contig4010	-	-	7e-26	At2g05990	MOD1 (MOSAIC DEATH 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3457_x_at	Contig3457	-	-	3e-43	At4g25630	FIB2 (FIBRILLARIN 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3457_at	Contig3457	-	-	3e-43	At4g25630	FIB2 (FIBRILLARIN 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig3456_s_at	Contig3456	-	-	8e-40	At4g25630	FIB2 (FIBRILLARIN 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig7056_at	Contig7056	-	-	6e-30	At1g76810	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	6e-7	56	Arabidopsis thaliana	At3g61070	825279	PEX11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-8	61	Glycine max	Gma.1739.2.S1_s_at	BG043689	-	-	2e-21	At3g61070	PEX11E	C.G.	S.X.	Please select
0.49	8e-156	551	Oryza sativa	Os06g0127000	AK100186.1	-	Peroxisomal biogenesis factor 11 family protein	7e-16	At2g45740	PEX11D	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	9e-13	75	Populus trichocarpa	PtpAffx.17383.1.S1_s_at	CV283454	hypothetical protein	-	9e-59	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	1124	Triticum aestivum	Ta.2871.1.S1_at	CK193836	-	-	5e-11	At2g45740	PEX11D	C.G.	S.X.	Please select
0.07	3e-12	71	Vitis vinifera	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.44	2e-100	365	Zea mays	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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