Gene omics information

Query gene ID	Contig7579_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.8	Contig7579_at	Contig7579	-	-	1e-57	At3g03940	protein kinase family protein	S.X.	H.G.	Please select
0.90	95.7	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	S.X.	H.G.	Please select
0.88	95.2	Contig10093_s_at	Contig10093	-	-	2e-3	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	S.X.	H.G.	Please select
0.86	94.8	Contig10358_at	Contig10358	-	-	8e-1	At5g67580	TRB2	S.X.	H.G.	Please select
0.83	94.0	Contig6677_s_at	Contig6677	-	-	1e-1	At5g17510	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HVSMEa0009A11r2_at	HVSMEa0009A11r2	-	-	1e-2	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	S.X.	H.G.	Please select
0.83	94.0	Contig4386_at	Contig4386	-	-	5e-2	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	S.X.	H.G.	Please select
0.83	94.0	Contig6938_at	Contig6938	-	-	1e+0	At1g45145	ATTRX5	S.X.	H.G.	Please select
0.83	94.0	Contig4217_at	Contig4217	-	-	3e-71	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.82	93.1	Contig10142_at	Contig10142	-	-	1e-1	At1g12665	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	4e-25	115	Contig9198_at	Contig9198	-	-	1e-22	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.26	2e-20	99	Contig11330_at	Contig11330	-	-	2e-15	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.26	2e-15	83	Contig18967_at	Contig18967	-	-	7e-25	At3g03940	protein kinase family protein	C.G.	S.X.	Please select
0.20	3e-10	65	Contig9848_at	Contig9848	-	-	3e-21	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.05	5e-6	52	Contig6056_s_at	Contig6056	-	-	7e-19	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig15265_at	Contig15265	-	-	7e+0	At5g12880	proline-rich family protein	C.G.	S.X.	Please select
0.02	8e-2	38	HI05D24u_at	HI05D24u	-	-	5e+0	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig7213_at	Contig7213	-	-	8e-27	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13019_at	Contig13019	-	-	2e-10	At2g41670	GTP-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	1e-57	224	Arabidopsis thaliana	At3g03940	819551	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	1e-49	198	Glycine max	GmaAffx.56354.2.S1_at	BI426749	-	-	2e-21	At3g03930	protein kinase-related	C.G.	S.X.	Please select
0.44	0	1021	Oryza sativa	Os03g0793500	AK121620.1	-	Casein kinase-like protein	4e-38	At3g03940	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	1e-67	258	Populus trichocarpa	Ptp.5140.1.S1_s_at	BU822372	hypothetical protein	-	2e-117	At5g18190	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	1328	Triticum aestivum	Ta.5905.1.S1_at	CD896892	-	-	4e-23	At3g03930	protein kinase-related	C.G.	S.X.	Please select
0.34	7e-32	137	Vitis vinifera	1611182_at	CF512709	hypothetical protein LOC100267624	-	2e-20	At3g03930	protein kinase-related	C.G.	S.X.	Please select
0.60	8e-159	559	Zea mays	Zm.6736.2.A1_at	AY106527.1	ATP binding protein	-	2e-35	At3g03940	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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