Gene omics information

Query gene ID	Contig7564_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7564_at	Contig7564	-	-	4e-5	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.53	69.7	Contig15957_at	Contig15957	-	-	3e+0	At5g07100	WRKY26	S.X.	H.G.	Please select
0.33	42.6	HVSMEm0007D17r2_at	HVSMEm0007D17r2	-	-	5e+0	At5g59050	unknown protein	S.X.	H.G.	Please select
0.16	15.3	AF016328_at	AF016328	-	-	7e-2	At1g75050	-	S.X.	H.G.	Please select
0.04	3.4	HT11O19u_at	HT11O19u	-	-	4e-5	At4g33080	protein kinase, putative	S.X.	H.G.	Please select
0.02	1.8	HVSMEb0009N20r2_at	HVSMEb0009N20r2	-	-	6e+0	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.7	96.9	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-28	125	HVSMEb0006M18r2_x_at	HVSMEb0006M18r2	-	-	5e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig15346_at	Contig15346	-	-	4e+0	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig14134_at	Contig14134	-	-	2e+0	At2g32050	cell cycle control protein-related	C.G.	S.X.	Please select
0.01	2e-2	40	Contig4586_at	Contig4586	-	-	1e-6	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig1810_at	Contig1810	-	-	6e-31	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig2369_s_at	Contig2369	-	-	1e-16	At5g23900	60S ribosomal protein L13 (RPL13D)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig22509_at	Contig22509	-	-	3e-1	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig104_x_at	Contig104	-	-	7e-2	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.02	8e-2	38	Contig27_s_at	Contig27	-	-	5e-2	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e-5	50	Arabidopsis thaliana	At2g32080	817768	PUR ALPHA-1	similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-30	135	Glycine max	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please select
0.68	0	698	Oryza sativa	Os01g0260700	CB659887	-	PUR-alpha/beta/gamma, DNA/RNA-binding familyprotein	3e-12	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-5	52	Populus trichocarpa	PtpAffx.134857.1.S1_at	CX185540	hypothetical protein	-	2e-43	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	0	1685	Triticum aestivum	Ta.4232.1.S1_s_at	CK169440	-	-	5e-5	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please select
0.06	3e-9	61	Vitis vinifera	1615027_s_at	CB977478	hypothetical protein LOC100246785	-	1e-15	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please select
0.60	4e-136	484	Zea mays	Zm.2102.1.A1_at	AW267527	hypothetical protein LOC100274069	-	3e-3	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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