Gene omics information

Query gene ID	Contig7519_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig7519_at	Contig7519	-	-	1e-13	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.56	74.3	Contig75_x_at	Contig75	-	-	8e-45	At1g09200	histone H3	S.X.	H.G.	Please select
0.56	74.3	Contig3058_at	Contig3058	-	-	2e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	S.X.	H.G.	Please select
0.53	69.7	baak1o23_s_at	baak1o23	-	-	1e+1	At4g18070	unknown protein	S.X.	H.G.	Please select
0.48	63.2	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.42	55.2	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	S.X.	H.G.	Please select
0.39	50.5	Contig14349_at	Contig14349	-	-	1e+1	Atmg00010	-	S.X.	H.G.	Please select
0.39	50.5	Contig11617_at	Contig11617	-	-	5e-7	At2g18990	TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)	S.X.	H.G.	Please select
0.39	50.5	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.9	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8	98.6	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
7.3	98.5	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.9	98.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	672	Contig7520_s_at	Contig7520	-	-	3e+0	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.29	7e-137	486	Contig7518_at	Contig7518	-	-	2e+0	At1g64107	-	C.G.	S.X.	Please select
0.02	5e-2	38	Contig15708_at	Contig15708	-	-	7e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	HY08D02u_x_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.04	2e-1	36	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig85_x_at	Contig85	-	-	2e-6	At1g08880	H2AXA	C.G.	S.X.	Please select
0.02	8e-1	34	Contig26505_at	Contig26505	-	-	1e+0	At5g54300	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig18582_at	Contig18582	-	-	2e+0	At5g59220	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	8e-1	34	Contig18337_at	Contig18337	-	-	1e+1	At2g21780	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-13	77	Arabidopsis thaliana	At1g03150	839562	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MBOFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	2e-34	147	Glycine max	Gma.3809.1.S1_at	BI470582	-	-	1e-56	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.52	0	690	Oryza sativa	Os03g0699400	AK069110.1	-	N-acetyltransferase 5 (EC 2.3.1.-)	3e-27	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	8e-22	105	Populus trichocarpa	Ptp.2033.1.A1_at	BU896576	silencing group B protein	-	1e-78	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1011	Triticum aestivum	Ta.8431.1.S1_at	BQ161889	-	-	2e-12	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.23	4e-20	97	Vitis vinifera	1609586_at	CB920016	hypothetical protein LOC100252851	-	6e-87	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.53	0	640	Zea mays	Zm.2210.1.S1_at	AF384039.1	silencing group B protein	-	2e-24	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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