Gene omics information

Query gene ID	Contig7486_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig7486_at	Contig7486	-	-	2e+0	At4g26220	caffeoyl-CoA 3-O-methyltransferase, putative	S.X.	H.G.	Please select
0.71	87.1	Contig4454_at	Contig4454	-	-	2e-26	At3g18190	chaperonin, putative	S.X.	H.G.	Please select
0.70	86.0	Contig10368_at	Contig10368	-	-	4e-1	At1g36940	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig4453_at	Contig4453	-	-	3e-3	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	S.X.	H.G.	Please select
0.59	75.8	Contig7585_at	Contig7585	-	-	2e+0	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	S.X.	H.G.	Please select
0.43	56.4	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig12024_at	Contig12024	-	-	3e-32	At5g20930	TSL (TOUSLED)	S.X.	H.G.	Please select
0.36	47.1	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.9	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM160744	drought control rep2	GSE6990	Barley drought stress
5.2	97.4	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
5.0	97.2	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
5.0	97.2	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.9	97.1	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
4.9	97.1	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
4.8	97.0	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-2	38	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	7e-2	38	Contig5879_at	Contig5879	-	-	8e-1	At4g35630	PSAT	C.G.	S.X.	Please select
0.03	7e-2	38	Contig3952_at	Contig3952	-	-	7e-1	At1g25400	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig13772_at	Contig13772	-	-	8e+0	At4g39830	L-ascorbate oxidase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig8113_s_at	Contig8113	-	-	4e-1	At5g49400	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.04	3e-1	36	Contig15445_at	Contig15445	-	-	3e-2	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig10700_at	Contig10700	-	-	2e+0	At4g15990	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	HO15G06S_at	HO15G06S	-	-	2e-1	At5g48640	cyclin family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig16695_at	Contig16695	-	-	2e-2	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g26220	828728	caffeoyl-CoA 3-O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.CL2128Contig1_at	PsAffx.CL2128Contig1	-	-	1e+0	At5g42530	unknown protein	C.G.	S.X.	Please select
0.35	2e-70	268	Oryza sativa	Os06g0705100	AK119552.1	-	Conserved hypothetical protein	1e-8	At4g02530	chloroplast thylakoid lumen protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-2	40	Populus trichocarpa	PtpAffx.56598.1.A1_at	CV258919	-	-	2e-2	At2g34420	LHB1B2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	928	Triticum aestivum	Ta.25440.1.S1_a_at	AJ602087	-	-	2e+0	At2g29460	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1606708_at	CF513593	hypothetical protein LOC100265804	-	1e-3	At5g24165	unknown protein	C.G.	S.X.	Please select
0.31	6e-67	254	Zea mays	Zm.11806.1.S1_at	BM380898	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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