Gene omics information

Query gene ID	Contig7454_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig7454_at	Contig7454	-	-	1e-8	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.83	94.0	Contig17478_at	Contig17478	-	-	2e+0	At2g17695	unknown protein	S.X.	H.G.	Please select
0.37	47.9	Contig13169_at	Contig13169	-	-	2e-24	At1g76860	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.21	22.6	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.19	19.6	Contig832_s_at	Contig832	-	-	9e-6	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	S.X.	H.G.	Please select
0.18	18.2	Contig10896_at	Contig10896	-	-	5e-41	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	S.X.	H.G.	Please select
0.16	15.3	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.5	99.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.7	99.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
23.7	99.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
14.4	99.5	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
14.4	99.5	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.4	99.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.5	99.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.9	99.1	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-46	184	Contig6213_s_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.19	6e-46	184	Contig6213_x_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.19	6e-46	184	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.02	3e-4	46	HP01B12w_at	HP01B12w	-	-	5e+0	At5g42640	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Contig18024_at	Contig18024	-	-	9e-8	At2g19760	PRF1 (PROFILIN 1)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig3810_s_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig2518_s_at	Contig2518	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig5311_at	Contig5311	O-methyltransferase	-	7e-1	At1g62900	O-methyltransferase, putative	C.G.	S.X.	Please select
0.01	8e-2	38	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-8	61	Arabidopsis thaliana	At1g05850	837095	POM1 (POM-POM1)	Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-8	61	Glycine max	Gma.6081.1.S1_at	BI967474	-	-	5e-5	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.58	0	854	Oryza sativa	Os08g0522500	AK106190.1	-	Glycoside hydrolase, family 19 protein	3e-6	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-9	63	Populus trichocarpa	Ptp.5529.1.S1_s_at	CV252273	hypothetical protein	-	6e-17	At3g16920	chitinase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	0	734	Triticum aestivum	Ta.5676.2.S1_a_at	CD936360	-	-	4e-3	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.14	9e-13	73	Vitis vinifera	1614551_at	CB343715	hypothetical protein LOC100261982	-	2e-18	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.26	1e-58	226	Zea mays	Zm.3726.1.A1_at	AY105990.1	hypothetical protein LOC100274504	-	2e-1	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage