Gene omics information

Query gene ID	Contig7425_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig7425_at	Contig7425	-	-	2e-41	At1g62740	stress-inducible protein, putative	S.X.	H.G.	Please select
0.04	3.4	Contig6752_s_at	Contig6752	-	-	4e+0	At2g33845	DNA-binding protein-related	S.X.	H.G.	Please select
0.02	1.8	Contig13842_at	Contig13842	-	-	5e+0	At2g20515	unknown protein	S.X.	H.G.	Please select
0.02	1.8	Contig11346_at	Contig11346	-	-	8e-1	At1g67430	60S ribosomal protein L17 (RPL17B)	S.X.	H.G.	Please select
0.02	1.8	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.01	1.1	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.1	99.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.3	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
22.9	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.1	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.8	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.8	99.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.3	99.0	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.7	98.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-147	521	Contig3357_at	Contig3357	-	-	1e-15	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig2066_at	Contig2066	-	-	2e+0	At4g22650	-	C.G.	S.X.	Please select
0.02	6e-3	42	Contig2056_at	Contig2056	-	-	5e+0	At4g03156	small GTPase-related	C.G.	S.X.	Please select
0.02	6e-3	42	Contig2056_x_at	Contig2056	-	-	5e+0	At4g03156	small GTPase-related	C.G.	S.X.	Please select
0.01	1e-1	38	Contig11654_at	Contig11654	-	-	8e-7	At1g22610	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8783_at	Contig8783	-	-	2e+0	At1g33055	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6040_at	Contig6040	-	-	1e-18	At5g38830	tRNA synthetase class I (C) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5705_at	Contig5705	-	-	4e-2	At5g06570	hydrolase	C.G.	S.X.	Please select
0.02	4e-1	36	Contig11939_at	Contig11939	-	-	5e-3	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-41	171	Arabidopsis thaliana	At1g62740	842572	stress-inducible protein, putative	F:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	2e-11	71	Glycine max	Gma.8435.1.S1_at	X79770.1	stress inducible protein	-	1e-61	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.56	0	825	Oryza sativa	Os.16317.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	4e-37	157	Populus trichocarpa	PtpAffx.215660.1.S1_s_at	pmrna29980	hypothetical protein	-	1e-64	At4g12400	stress-inducible protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-134	480	Triticum aestivum	Ta.8679.1.S1_x_at	CK157404	-	-	1e-9	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.21	1e-33	143	Vitis vinifera	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.57	0	854	Zea mays	Zm.2497.1.S1_at	AY107480.1	hypothetical protein LOC100272917	-	3e-55	At4g12400	stress-inducible protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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