Gene omics information

Query gene ID	Contig7360_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.60	77.3	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.50	66.9	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	S.X.	H.G.	Please select
0.31	38.6	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.1	99.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.1	99.3	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.1	99.3	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.2	99.2	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2	99.1	GSM398254	Martin_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.1	99.1	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.0	99.1	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.7	99.0	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.6	99.0	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2551	Contig7360_s_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	C.G.	S.X.	Please select
0.07	7e-27	121	Contig8872_at	Contig8872	-	-	1e-5	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.09	1e-22	107	Contig9315_at	Contig9315	-	-	5e-2	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.08	2e-15	83	HVSMEa0019D10r2_at	HVSMEa0019D10r2	-	-	2e+1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig1205_s_at	Contig1205	-	-	3e-10	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig1213_at	Contig1213	-	-	2e-21	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.02	8e-2	38	Contig7824_at	Contig7824	-	-	1e+1	At5g23100	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig11636_at	Contig11636	-	-	6e-1	At1g23040	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig7791_at	Contig7791	-	-	9e-23	At2g01270	AtQSOX2 (quiescin-sulfhydryl oxidase 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At4g19620	827704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-5	50	Glycine max	GmaAffx.45249.1.S1_at	AW132733	-	-	1e-16	At5g15850	COL1 (constans-like 1)	C.G.	S.X.	Please select
0.35	2e-55	218	Oryza sativa	Os09g0240200	AB001887.1	-	Zn-finger, CONSTANS type domain containing protein	7e-1	At5g15840	CO (CONSTANS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.216694.1.S1_at	pmrna31642	hypothetical protein	-	7e+0	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	737	Triticum aestivum	Ta.1249.1.S1_at	CK212500	-	-	3e+0	At5g24930	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.07	5e-2	38	Vitis vinifera	1617734_at	BQ800087	-	-	2e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please select
0.08	9e-23	107	Zea mays	Zm.15291.1.S1_at	BG841534	CONSTANS-like protein CO6	-	1e-1	At4g15490	UGT84A3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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