CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig7349_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.68 85.1 Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A S.X. H.G.
0.60 77.3 Contig2940_s_at Contig2940 - - 5e-6 At2g47380 cytochrome c oxidase subunit Vc family protein / COX5C family protein S.X. H.G.
0.56 74.3 Contig665_s_at Contig665 - - 2e-20 At1g07820 histone H4 S.X. H.G.
0.51 67.5 Contig344_at Contig344 - - 5e-1 At1g71520 AP2 domain-containing transcription factor, putative S.X. H.G.
0.47 62.2 Contig13733_at Contig13733 - - 2e-3 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
0.44 58.9 Contig4893_at Contig4893 - - 2e-25 At3g02780 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2) S.X. H.G.
0.44 58.9 Contig24576_at Contig24576 - - 1e+0 At5g28295 unknown protein S.X. H.G.
0.43 56.4 Contig6283_at Contig6283 - - 1e-1 At3g60410 unknown protein S.X. H.G.
0.43 56.4 Contig2828_at Contig2828 - - 2e-50 At5g63400 ADK1 (ADENYLATE KINASE 1) S.X. H.G.
0.42 55.2 Contig15424_at Contig15424 - - 2e+1 At1g03950 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 99.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.3 99.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7 99.2 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0 93.8 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0 93.8 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.9 93.4 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
2.9 93.4 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
2.9 93.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.8 93.1 GSM372951 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-6 52 Contig22053_at Contig22053 - - 1e-4 At2g44610 RAB6A C.G. S.X.
0.03 8e-2 38 Contig3337_s_at Contig3337 - - 5e-50 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.03 8e-2 38 HI01O12w_at HI01O12w - - 3e-29 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.03 8e-2 38 Contig3337_at Contig3337 - - 5e-50 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.02 3e-1 36 Contig3364_at Contig3364 - - 8e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) C.G. S.X.
0.03 3e-1 36 HB04I10r_x_at HB04I10r - - 5e+0 At5g56230 PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) C.G. S.X.
0.02 3e-1 36 Contig9907_at Contig9907 - - 4e-11 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.03 3e-1 36 HB04I10r_at HB04I10r - - 5e+0 At5g56230 PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) C.G. S.X.
0.02 3e-1 36 Contig9907_s_at Contig9907 - - 4e-11 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 1e-66 254 Arabidopsis thaliana At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. - - - C.G. S.X.
0.38 4e-92 339 Glycine max Gma.3568.1.S1_x_at BI941735 - - 1e-54 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.53 0 811 Oryza sativa Os07g0496000 AK111986.1 - Nt-rab6 protein 9e-68 At2g44610 RAB6A C.G. S.X.
0.46 3e-59 230 Populus trichocarpa PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.81 0 1193 Triticum aestivum Ta.28749.1.S1_a_at CK213968 - - 2e-59 At2g44610 RAB6A C.G. S.X.
0.36 2e-69 262 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.57 0 833 Zea mays Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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