CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig7346_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 78.7 Contig7346_at Contig7346 - - 5e-1 At4g36560 unknown protein S.X. H.G.
0.50 66.9 Contig15126_at Contig15126 - - 5e-2 At1g04590 - S.X. H.G.
0.41 53.9 Contig15382_at Contig15382 - - 7e+0 Atmg00550 - S.X. H.G.
0.40 53.1 Contig1035_at Contig1035 - - 6e-58 At4g02890 UBQ14 S.X. H.G.
0.40 53.1 Contig19923_at Contig19923 - - 3e-1 At4g26950 unknown protein S.X. H.G.
0.31 38.6 Contig11674_at Contig11674 - - 3e-1 At5g49420 MADS-box protein (AGL84) S.X. H.G.
0.30 37.0 Contig23308_at Contig23308 - - 1e+0 At3g13820 F-box family protein S.X. H.G.
0.30 37.0 Contig12778_at Contig12778 - - 2e-3 At1g76730 5-formyltetrahydrofolate cyclo-ligase family protein S.X. H.G.
0.24 27.2 Contig19027_at Contig19027 - - 1e+0 At5g05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.1 99.5 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.8 99.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4 98.5 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2 96.3 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 7e-20 97 Contig7348_at Contig7348 - - 8e+0 At5g67640 unknown protein C.G. S.X.
0.06 4e-15 81 Contig8034_at Contig8034 - - 4e-8 At3g22320 NRPB5 C.G. S.X.
0.03 1e-2 40 Contig7585_at Contig7585 - - 2e+0 At3g54490 RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E) C.G. S.X.
0.02 2e-1 36 Contig8976_at Contig8976 - - 1e-20 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.01 2e-1 36 Contig3357_at Contig3357 - - 1e-15 At1g62740 stress-inducible protein, putative C.G. S.X.
0.02 9e-1 34 Contig7933_s_at Contig7933 - - 5e-1 At5g48540 33 kDa secretory protein-related C.G. S.X.
0.01 9e-1 34 Contig9031_at Contig9031 - - 2e-4 At5g18270 ANAC087 C.G. S.X.
0.01 9e-1 34 Contig14014_at Contig14014 - - 1e-2 At3g29070 protein transmembrane transporter C.G. S.X.
0.01 9e-1 34 Contig9612_s_at Contig9612 - - 7e-1 At5g09540 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At4g36560 829808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.16 1e-8 61 Glycine max Gma.17432.1.S1_at AW277783 - - 1e-4 At3g22320 NRPB5 C.G. S.X.
0.20 8e-26 119 Oryza sativa Os04g0487300 AK100492.1 - RNA polymerase I, II and III 24.3 kDa subunit(AT3g22320/MCB17_5) 9e-2 At3g22320 NRPB5 C.G. S.X.
0.07 5e-8 59 Populus trichocarpa Ptp.6236.1.S1_at CV245192 hypothetical protein - 1e-44 At3g22320 NRPB5 C.G. S.X.
0.61 2e-139 496 Triticum aestivum Ta.22111.1.S1_at CK210511 - - 5e-1 At4g36560 unknown protein C.G. S.X.
0.06 4e-2 38 Vitis vinifera 1621462_at CA817683 hypothetical protein LOC100259318 - 5e-38 At3g22320 NRPB5 C.G. S.X.
0.26 2e-10 65 Zea mays Zm.6826.2.A1_a_at CK368983 hypothetical protein LOC100193880 - 1e-1 At3g22320 NRPB5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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