Gene omics information

Query gene ID	Contig7315_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig7315_at	Contig7315	-	-	1e+0	At1g54060	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	S.X.	H.G.	Please select
0.61	78.7	Contig19839_at	Contig19839	-	-	7e+0	At5g17180	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	S.X.	H.G.	Please select
0.27	32.1	Contig4121_at	Contig4121	-	-	2e-45	At4g24830	arginosuccinate synthase family	S.X.	H.G.	Please select
0.19	19.6	Contig22871_at	Contig22871	-	-	4e-16	At2g04410	-	S.X.	H.G.	Please select
0.16	15.3	Contig18743_at	Contig18743	-	-	1e+0	At4g12350	MYB42 (myb domain protein 42)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.9	99.9	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
23.7	99.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.1	99.7	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
19.3	99.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
17.2	99.6	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.0	99.5	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.5	99.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
12.5	99.4	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9	99.2	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.7	99.2	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	1e-91	335	Contig3187_s_at	Contig3187	-	-	1e+0	At1g31410	putrescine-binding periplasmic protein-related	C.G.	S.X.	Please select
0.68	1e-66	252	Contig3186_at	Contig3186	-	-	5e+0	At5g48657	defense protein-related	C.G.	S.X.	Please select
0.61	8e-62	236	Contig3185_s_at	Contig3185	-	-	1e+0	At3g24820	BSD domain-containing protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig19943_at	Contig19943	-	-	5e+0	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	C.G.	S.X.	Please select
0.04	6e-1	34	Contig20237_at	Contig20237	-	-	1e+0	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig17638_at	Contig17638	cysteine proteinase precursor	-	4e-2	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Contig18232_at	Contig18232	-	-	2e+0	At3g51790	ATG1 (ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8683_at	Contig8683	-	-	5e-1	At1g58070	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9600_at	Contig9600	-	-	3e-3	At3g23480	cyclopropane fatty acid synthase-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g54060	841844	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psZG001xH03f_s_at	PsAffx.psZG001xH03f	-	-	3e+0	At4g08320	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os03g0182000	9631.m00783	-	-	5e-2	At1g53620	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-1	38	Populus trichocarpa	PtpAffx.216830.1.S1_at	pmrna31867	hypothetical protein	-	3e+1	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	7e-98	357	Triticum aestivum	TaAffx.131916.2.S1_at	CA732003	-	-	4e+0	At5g13330	Rap2.6L (related to AP2 6L)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613604_at	CK138243.1	-	-	1e-37	At5g47540	binding	C.G.	S.X.	Please select
0.05	2e+0	32	Zea mays	ZmAffx.1533.1.S1_at	40794996-14	-	-	3e+0	At3g53610	ATRAB8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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