Gene omics information

Query gene ID	Contig7306_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	S.X.	H.G.	Please select
0.55	72.0	Contig8266_at	Contig8266	-	-	2e+0	At1g44318	hemb2	S.X.	H.G.	Please select
0.44	58.9	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.43	56.4	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig6023_s_at	Contig6023	-	-	3e-12	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.13	11.6	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	99.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	38	EBem10_SQ004_F11_at	EBem10_SQ004_F11	-	-	2e-2	At1g74530	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10880_at	Contig10880	-	-	9e-3	At2g46610	arginine/serine-rich splicing factor, putative	C.G.	S.X.	Please select
0.03	3e+0	32	EBro08_SQ006_D12_s_at	EBro08_SQ006_D12	-	-	9e-1	At4g35720	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig10759_at	Contig10759	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig741_s_at	Contig741	-	-	9e-32	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig15801_at	Contig15801	-	-	3e-8	At3g24730	catalytic	C.G.	S.X.	Please select
0.01	3e+0	32	Contig741_at	Contig741	-	-	9e-32	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig10793_at	Contig10793	-	-	6e-17	At3g54460	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Contig16375_at	Contig16375	-	-	3e-1	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g17820	821050	ATGSKB6	encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-4	48	Glycine max	Gma.7781.1.A1_at	AI966523	-	-	2e-6	At2g19560	EER5 (ENHANCED ETHYLENE RESPONSE 5)	C.G.	S.X.	Please select
0.33	4e-67	256	Oryza sativa	Os09g0386400	AK063271.1	-	Proteasome component region PCI domain containingprotein	6e-11	At2g19560	EER5 (ENHANCED ETHYLENE RESPONSE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	9e-6	52	Populus trichocarpa	Ptp.1316.1.A1_s_at	CK093303	hypothetical protein	-	6e-34	At2g19560	EER5 (ENHANCED ETHYLENE RESPONSE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	1e-133	476	Triticum aestivum	Ta.7559.2.S1_a_at	CA640276	-	-	4e+0	At5g42420	transporter-related	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1621776_at	CD715288	hypothetical protein LOC100267239	-	2e+0	At2g46530	ARF11 (AUXIN RESPONSE FACTOR 11)	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.880.1.S1_at	AI770800	protein kinase-like	-	3e+0	At3g17100	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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