Gene omics information

Query gene ID	Contig7277_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	S.X.	H.G.	Please select
0.55	72.0	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	S.X.	H.G.	Please select
0.33	42.6	Contig4424_at	Contig4424	-	-	1e-5	At5g40150	peroxidase, putative	S.X.	H.G.	Please select
0.31	38.6	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	S.X.	H.G.	Please select
0.30	37.0	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	S.X.	H.G.	Please select
0.27	32.1	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-37	157	Contig6496_at	Contig6496	-	-	7e+0	At4g02000	unknown protein	C.G.	S.X.	Please select
0.01	6e-5	50	Contig24678_at	Contig24678	-	-	1e+0	At2g45403	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	42	Contig3143_at	Contig3143	-	-	2e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.01	5e-2	40	Contig6926_at	Contig6926	-	-	2e-1	At5g15520	40S ribosomal protein S19 (RPS19B)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig8236_at	Contig8236	-	-	5e-1	At1g54780	thylakoid lumen 18.3 kDa protein	C.G.	S.X.	Please select
0.01	2e-1	38	Contig10075_at	Contig10075	-	-	2e-1	At1g08370	DCP1 (decapping 1)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.01	8e-1	36	Contig3559_at	Contig3559	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.01	8e-1	36	Contig8500_s_at	Contig8500	-	-	7e-1	At2g29290	tropinone reductase, putative / tropine dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-8	61	Arabidopsis thaliana	At5g11110	830979	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-11	73	Glycine max	Gma.2097.1.S1_at	AW309489	-	-	2e-76	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	C.G.	S.X.	Please select
0.71	0	3122	Oryza sativa	Os02g0184400	AK063433.1	-	Sucrose-phosphate synthase 9 (EC 2.4.1.14)	2e-9	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-13	77	Populus trichocarpa	PtpAffx.141421.1.S1_at	DN500621	hypothetical protein	-	1e-158	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1671	Triticum aestivum	Ta.20568.1.S1_at	BT009472.1	sucrose-phosphate synthase 9	-	5e-2	At4g10120	ATSPS4F	C.G.	S.X.	Please select
0.17	1e-17	91	Vitis vinifera	1612883_at	CF213322	hypothetical protein LOC100241955	-	2e-95	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	C.G.	S.X.	Please select
0.33	0	735	Zea mays	Zm.5486.1.A1_at	AI629867	-	-	1e-1	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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