Gene omics information

Query gene ID	Contig7265_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig7265_s_at	Contig7265	-	-	1e-57	At5g47080	CKB1	S.X.	H.G.	Please select
0.50	66.9	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.50	66.9	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.44	58.9	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.40	53.1	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	S.X.	H.G.	Please select
0.19	19.6	Contig10811_at	Contig10811	-	-	1e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	5e-120	430	HS06E04u_s_at	HS06E04u	-	-	2e-1	At2g44065	ribosomal protein L2 family protein	C.G.	S.X.	Please select
0.38	5e-120	430	HS06E04u_x_at	HS06E04u	-	-	2e-1	At2g44065	ribosomal protein L2 family protein	C.G.	S.X.	Please select
0.40	1e-83	309	HVSMEb0007H14r2_at	HVSMEb0007H14r2	-	-	2e-1	At4g17640	CKB2	C.G.	S.X.	Please select
0.23	2e-70	266	Contig9028_at	Contig9028	-	-	5e-45	At2g44680	CKB4 (CASEIN KINASE II BETA SUBUNIT 4)	C.G.	S.X.	Please select
0.20	6e-21	101	Contig7260_at	Contig7260	casein kinase II beta	-	1e-17	At4g17640	CKB2	C.G.	S.X.	Please select
0.02	3e-1	36	Contig23974_at	Contig23974	-	-	3e-1	Atmg00240	-	C.G.	S.X.	Please select
0.03	3e-1	36	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10691_s_at	Contig10691	-	-	8e-1	At1g67330	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	EBma01_SQ002_F07_s_at	EBma01_SQ002_F07	-	-	2e+0	At3g18460	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-57	224	Arabidopsis thaliana	At5g47080	834754	CKB1	Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	1e-42	174	Glycine max	Gma.5686.1.S1_at	CA935460	-	-	3e-58	At5g47080	CKB1	C.G.	S.X.	Please select
0.47	0	642	Oryza sativa	Os07g0495100	AK121850.1	-	Possible protein kinase CK2 regulatory subunit(Fragment)	4e-83	At5g47080	CKB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	5e-61	236	Populus trichocarpa	PtpAffx.34708.1.S1_s_at	CV283287	hypothetical protein	-	1e-88	At5g47080	CKB1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1491	Triticum aestivum	Ta.10124.1.S1_at	BJ218430	-	-	2e-78	At5g47080	CKB1	C.G.	S.X.	Please select
0.42	5e-39	161	Vitis vinifera	1612977_at	CF204464.1	hypothetical protein LOC100266745	-	5e-53	At3g60250	CKB3	C.G.	S.X.	Please select
0.49	0	638	Zea mays	Zm.1906.1.S1_at	AF239818.1	protein kinase CK2 regulatory subunit CK2B3	-	4e-33	At3g60250	CKB3	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage