Gene omics information

Query gene ID	Contig7221_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	88.7	Contig1913_s_at	Contig1913	-	-	2e-46	At3g09200	60S acidic ribosomal protein P0 (RPP0B)	S.X.	H.G.	Please select
0.67	84.7	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.61	78.7	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.42	55.2	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select
0.38	49.5	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.8	99.9	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
25.7	99.8	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
22.1	99.8	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.8	99.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
15.4	99.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.4	99.6	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
15.3	99.6	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
14.2	99.5	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.9	99.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
12.5	99.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1419	Contig7221_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.16	6e-23	107	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	C.G.	S.X.	Please select
0.14	9e-19	93	Contig3670_at	Contig3670	-	-	2e+0	At1g05430	unknown protein	C.G.	S.X.	Please select
0.17	8e-16	83	HVSMEa0004N04r2_at	HVSMEa0004N04r2	-	-	3e-1	At5g16400	ATF2	C.G.	S.X.	Please select
0.19	3e-6	52	Contig24850_at	Contig24850	-	-	5e+0	At2g12462	unknown protein	C.G.	S.X.	Please select
0.06	2e-4	46	HW03H14u_at	HW03H14u	-	-	7e-1	At5g38220	hydrolase	C.G.	S.X.	Please select
0.10	2e-4	46	Contig17960_at	Contig17960	-	-	2e+0	At5g25425	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig383_at	Contig383	-	-	2e-2	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig7773_at	Contig7773	-	-	3e-13	At3g09550	protein binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g47610	834811	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psHA008iG09r_s_at	PsAffx.psHA008iG09r	-	-	6e-1	At5g48530	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	Os.24076.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.84715.1.S1_at	CV261680	-	-	9e-1	At4g27920	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	2e-107	389	Triticum aestivum	TaAffx.98064.1.A1_at	BQ168859	-	-	4e+0	At2g06925	PLA2-ALPHA	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1616163_at	CF371751	hypothetical protein LOC100263636	-	4e+0	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.975.1.S1_at	AI833930	Nucleosome/chromatin assembly factor C	-	2e-1	At1g23150	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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