Gene omics information

Query gene ID	Contig7157_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7157_at	Contig7157	-	-	2e-11	At2g24500	FZF	S.X.	H.G.	Please select
0.60	77.3	Contig16344_at	Contig16344	-	-	2e+0	At3g15410	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.55	72.0	Contig20244_at	Contig20244	-	-	2e-4	At4g37200	HCF164	S.X.	H.G.	Please select
0.55	72.0	Contig15381_at	Contig15381	-	-	5e-14	At5g14040	mitochondrial phosphate transporter	S.X.	H.G.	Please select
0.50	66.9	Contig18188_at	Contig18188	-	-	2e+0	At1g26820	RNS3 (RIBONUCLEASE 3)	S.X.	H.G.	Please select
0.31	38.6	Contig13773_at	Contig13773	-	-	5e+0	At5g24352	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.2	99.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
19.4	99.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
16.5	99.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.6	99.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
10.0	99.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.2	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.3	98.8	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-3	44	Contig5704_at	Contig5704	-	-	2e-1	At1g49640	hydrolase	C.G.	S.X.	Please select
0.02	6e-3	42	Contig11500_at	Contig11500	-	-	4e-5	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig12088_at	Contig12088	-	-	2e-4	At5g20270	HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig3724_at	Contig3724	-	-	2e-7	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig1353_s_at	Contig1353	-	-	1e-1	At4g11300	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5612_s_at	Contig5612	-	-	3e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	1e-1	38	HVSMEl0002C19r2_at	HVSMEl0002C19r2	-	-	5e+0	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.03	1e-1	38	HF21N04r_at	HF21N04r	-	-	2e+0	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5612_at	Contig5612	-	-	3e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-11	71	Arabidopsis thaliana	At2g24500	816986	FZF	Encodes a C2H2 zinc finger protein FZF.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-8	61	Glycine max	PsAffx.psZG007xK19f_at	PsAffx.psZG007xK19f	-	-	9e-7	At4g31420	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.58	0	636	Oryza sativa	Os06g0693500	AK103176.1	-	Zn-finger, C2H2 type domain containing protein	1e-15	At2g24500	FZF	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	5e-9	63	Populus trichocarpa	Ptp.6008.1.S1_s_at	CK087638	hypothetical protein	-	2e-43	At4g31420	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	2135	Triticum aestivum	Ta.3489.1.S1_s_at	CK199652	-	-	1e-12	At2g24500	FZF	C.G.	S.X.	Please select
0.03	4e-3	42	Vitis vinifera	1611484_at	CA817872	-	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	C.G.	S.X.	Please select
0.54	8e-101	367	Zea mays	Zm.6980.1.S1_at	CK786983	zinc finger protein 622	-	2e-11	At2g24500	FZF	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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