Gene omics information

Query gene ID	Contig7155_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	S.X.	H.G.	Please select
0.60	77.3	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	S.X.	H.G.	Please select
0.53	69.7	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.43	56.4	Contig10745_at	Contig10745	-	-	5e-1	At5g43380	TOPP6	S.X.	H.G.	Please select
0.40	53.1	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.40	53.1	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.21	22.6	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.8	99.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
38.8	99.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
13.8	99.5	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.8	99.5	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.4	99.4	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.4	99.4	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.1	99.2	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
8.8	98.9	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
8.4	98.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
8.2	98.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-17	89	Contig7156_at	Contig7156	-	-	3e+0	At1g11470	-	C.G.	S.X.	Please select
0.04	1e-2	40	Contig6734_at	Contig6734	-	-	4e+0	At3g20230	50S ribosomal protein L18 family	C.G.	S.X.	Please select
0.03	2e-1	36	HY03N03T_at	HY03N03T	-	-	3e-1	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig4906_at	Contig4906	-	-	8e-4	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig330_at	Contig330	-	-	7e-4	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig23182_at	Contig23182	-	-	2e+0	At5g22580	-	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16837_at	Contig16837	-	-	1e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig13134_at	Contig13134	-	-	9e-3	At3g55530	SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1)	C.G.	S.X.	Please select
0.03	6e-1	34	Contig10152_at	Contig10152	-	-	2e-1	At3g25290	auxin-responsive family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At1g65520	842864	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.75876.1.S1_at	BM269739	-	-	7e-1	At3g55677	-	C.G.	S.X.	Please select
0.35	2e-136	486	Oryza sativa	Os05g0556400	AK058980.1	-	DOMON domain containing protein	7e-1	At5g17900	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-6	54	Populus trichocarpa	PtpAffx.99131.1.S1_at	BI130580	hypothetical protein	-	1e+0	At1g31510	F-box family protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	749	Triticum aestivum	Ta.26050.1.S1_at	CD454963	-	-	6e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620163_x_at	CK138257.1	hypothetical protein LOC100247965	-	6e-4	At2g38905	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.48	7e-127	452	Zea mays	Zm.8858.1.A1_at	CO522727	hypothetical protein LOC100279959	-	4e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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