Gene omics information

Query gene ID	Contig7152_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	S.X.	H.G.	Please select
0.60	77.3	Contig2653_s_at	Contig2653	-	-	8e-2	At1g36390	co-chaperone grpE family protein	S.X.	H.G.	Please select
0.57	74.9	Contig11143_at	Contig11143	-	-	3e+0	At4g14810	unknown protein	S.X.	H.G.	Please select
0.46	61.0	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	S.X.	H.G.	Please select
0.20	21.1	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.7	96.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.5	96.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
4.2	96.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
4.0	96.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Contig6486_at	Contig6486	-	-	8e-23	At4g30780	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14866_at	Contig14866	-	-	7e-4	At1g47570	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEb0004M17r2_at	HVSMEb0004M17r2	-	-	1e+0	Atmg00450	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9627_at	Contig9627	-	-	3e-31	At2g32730	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9318_at	Contig9318	-	-	4e-26	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5711_at	Contig5711	-	-	1e-7	At1g21900	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig8408_at	Contig8408	-	-	5e-20	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig6166_at	Contig6166	-	-	7e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig5364_at	Contig5364	-	-	1e+0	At5g63250	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	2e-34	147	Arabidopsis thaliana	At3g58600	825029	-	F:molecular_function unknown;P:endocytosis;C:membrane;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	3e-28	127	Glycine max	GmaAffx.70975.1.S1_at	BQ741725	-	-	5e-25	At3g58600	-	C.G.	S.X.	Please select
0.49	7e-141	502	Oryza sativa	Os01g0614700	AK106098.1	-	Conserved hypothetical protein	5e-20	At3g58600	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-16	87	Populus trichocarpa	PtpAffx.30451.1.S1_a_at	CV245753	hypothetical protein	-	2e-47	At3g58600	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	0	793	Triticum aestivum	Ta.12915.2.S1_a_at	CA642338	-	-	2e-22	At3g58600	-	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1612974_at	CF513889	-	-	3e-4	At3g20890	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.35	7e-45	180	Zea mays	Zm.9433.2.A1_a_at	BG837727	hypothetical protein LOC100272882	-	4e-4	At3g58600	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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