Gene omics information

Query gene ID	Contig7103_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig7103_s_at	Contig7103	-	-	3e-16	At3g21430	-	S.X.	H.G.	Please select
0.91	98.1	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select
0.91	98.1	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.91	98.1	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	S.X.	H.G.	Please select
0.83	94.0	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.4	98.1	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.8	97.0	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	Contig8626_at	Contig8626	-	-	3e+0	At3g05935	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig19831_at	Contig19831	-	-	8e-3	At5g44930	ARAD2 (ARABINAN DEFICIENT 2)	C.G.	S.X.	Please select
0.01	2e+0	34	HVSMEg0005K08r2_at	HVSMEg0005K08r2	-	-	1e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig26054_at	Contig26054	-	-	1e-2	At4g30280	XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig19078_at	Contig19078	-	-	3e-2	At4g12680	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig9207_at	Contig9207	-	-	8e-7	At5g10740	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4389_at	Contig4389	-	-	3e+0	At5g61412	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	32	S0001000057N17F1_at	S0001000057N17F1	-	-	3e+0	At2g34900	IMB1 (IMBIBITION-INDUCIBLE 1)	C.G.	S.X.	Please select
0.01	8e+0	32	HA15P14r_s_at	HA15P14r	-	-	9e-7	At1g18080	ATARCA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-16	87	Arabidopsis thaliana	At3g21430	821697	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-6	54	Glycine max	GmaAffx.3372.1.S1_at	BE347731	-	-	3e+0	At5g22580	-	C.G.	S.X.	Please select
0.45	1e-174	615	Oryza sativa	Os03g0639200	9631.m04225	-	DIRP family protein	1e-13	At3g21430	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-6	56	Populus trichocarpa	PtpAffx.215989.1.S1_at	pmrna30485	hypothetical protein	-	1e-7	At3g05380	DNA binding / transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	2121	Triticum aestivum	Ta.8565.1.S1_at	CD453768	-	-	3e+0	At3g51240	F3H (FLAVANONE 3-HYDROXYLASE)	C.G.	S.X.	Please select
0.01	8e-2	38	Vitis vinifera	1619075_at	CF201190.1	-	-	4e-15	At1g45000	26S proteasome regulatory complex subunit p42D, putative	C.G.	S.X.	Please select
0.38	5e-56	218	Zea mays	Zm.6564.1.A1_at	AW231699	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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