Gene omics information

Query gene ID Contig7088_at
Gene name alpha-amylase type A, EC 3.2.1.1
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6279.1Contig7088_atContig7088alpha-amylase type A, EC 3.2.1.1-5e-2At4g25000AMY1 (ALPHA-AMYLASE-LIKE)S.X.H.G.
0.5975.8Contig25363_atContig25363cytokinin dehydrogenase 2-3e-5At3g63440CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)S.X.H.G.
0.4255.2Contig6799_atContig6799cinnamoyl CoA reductase-8e-13At1g15950CCR1 (CINNAMOYL COA REDUCTASE 1)S.X.H.G.
0.3747.9HY09E16u_s_atHY09E16u--4e+0At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingS.X.H.G.
0.3647.1Contig11797_atContig11797--1e+1At4g21216unknown proteinS.X.H.G.
0.3342.6Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)S.X.H.G.
0.3037.0Contig18916_atContig18916--9e-1At5g09995unknown proteinS.X.H.G.
0.2427.2HF12C18r_atHF12C18r--1e+0At5g22410peroxidase, putativeS.X.H.G.
0.1919.6Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)S.X.H.G.
0.1919.6Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
52.4100.0GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
49.399.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
36.599.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
29.399.9GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
23.399.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
22.399.8GSM71145OWB-D unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expression
20.799.7GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
13.899.5GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
13.799.5GSM71147OWB-D unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
11.599.3GSM71141OWB-D stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8101873Contig7087_atContig7087--8e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)C.G.S.X.
0.7801673Contig22899_atContig22899--7e-1At1g77180chromatin protein familyC.G.S.X.
0.541e-115416Contig3952_atContig3952--7e-1At1g25400unknown proteinC.G.S.X.
0.173e-32139Contig3953_s_atContig3953--5e+0At4g29660EMB2752 (EMBRYO DEFECTIVE 2752)C.G.S.X.
0.012e-240Contig5599_atContig5599--6e-1At1g16640transcriptional factor B3 family proteinC.G.S.X.
0.029e-238Contig7093_atContig7093--3e-2At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)C.G.S.X.
0.019e-238Contig10629_atContig10629--8e-3At5g52360ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)C.G.S.X.
0.019e-238Contig9368_atContig9368--8e-1At5g19810proline-rich extensin-like family proteinC.G.S.X.
0.029e-238Contig5692_s_atContig5692--6e-12At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-240Arabidopsis thalianaAt4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).---C.G.S.X.
0.021e+036Glycine maxPsAffx.psHB021xF01f_s_atPsAffx.psHB021xF01f--8e+0At1g43040auxin-responsive protein, putativeC.G.S.X.
0.582e-138494Oryza sativaOs06g0713800AK059671.1-Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase)6e-2At4g36780transcription regulatorC.G.S.X.
0.031e-346Populus trichocarpaPtpAffx.217860.1.S1_s_atpmrna33285hypothetical protein-6e-1At4g25000AMY1 (ALPHA-AMYLASE-LIKE)C.G.S.X.
0.7501689Triticum aestivumTa.10281.1.S1_atBQ169398--4e-2At4g25000AMY1 (ALPHA-AMYLASE-LIKE)C.G.S.X.
0.071e-344Vitis vinifera1620283_s_atCB916572hypothetical protein LOC100245165-1e+0At5g41030TCP family transcription factor, putativeC.G.S.X.
0.439e-88323Zea maysZm.54.1.S1_atL25805.1alpha-amylase-3e-3At4g25000AMY1 (ALPHA-AMYLASE-LIKE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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