CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig7087_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.5 Contig7087_at Contig7087 - - 8e-1 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) S.X. H.G.
0.67 84.7 Contig4910_at Contig4910 - - 3e+0 At5g09280 pectate lyase family protein S.X. H.G.
0.50 66.9 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.46 61.0 Contig13884_at Contig13884 - - 3e-5 At2g37510 RNA-binding protein, putative S.X. H.G.
0.40 53.1 EBem09_SQ005_B09_s_at EBem09_SQ005_B09 - - 3e+0 At4g13500 unknown protein S.X. H.G.
0.33 42.6 rbags17a19_s_at rbags17a19 - - 2e+0 At5g66985 unknown protein S.X. H.G.
0.23 26.1 Contig460_s_at Contig460 sucrose synthase - 6e-12 At5g20830 SUS1 (SUCROSE SYNTHASE 1) S.X. H.G.
0.14 12.9 HVSMEl0024B05r2_at HVSMEl0024B05r2 - - 4e+0 At5g08480 VQ motif-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
92.5 100.0 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
86.7 100.0 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
47.6 99.9 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
36.3 99.9 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
31.9 99.9 GSM71147 OWB-D unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
21.5 99.8 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
16.1 99.6 GSM71156 Morex stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
9.7 99.0 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.7 98.9 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
6.1 98.0 GSM71146 OWB-D unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.83 0 1959 Contig7088_at Contig7088 alpha-amylase type A, EC 3.2.1.1 - 5e-2 At4g25000 AMY1 (ALPHA-AMYLASE-LIKE) C.G. S.X.
0.77 0 1479 Contig22899_at Contig22899 - - 7e-1 At1g77180 chromatin protein family C.G. S.X.
0.52 2e-120 432 Contig3952_at Contig3952 - - 7e-1 At1g25400 unknown protein C.G. S.X.
0.17 6e-37 155 Contig3953_s_at Contig3953 - - 5e+0 At4g29660 EMB2752 (EMBRYO DEFECTIVE 2752) C.G. S.X.
0.01 6e-3 42 Contig5599_at Contig5599 - - 6e-1 At1g16640 transcriptional factor B3 family protein C.G. S.X.
0.02 1e-1 38 Contig13447_s_at Contig13447 - - 5e+0 At5g53205 unknown protein C.G. S.X.
0.01 1e-1 38 Contig3489_at Contig3489 - - 4e+0 At3g13882 structural constituent of ribosome C.G. S.X.
0.02 4e-1 36 HB01C06r_at HB01C06r - - 1e+0 At5g27541 C.G. S.X.
0.02 4e-1 36 Contig25691_at Contig25691 - - 2e-2 At1g62880 cornichon family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At3g27160 822335 GHS1 (GLUCOSE HYPERSENSITIVE 1) GHS1 encodes plastid ribosomal protein S21 - - - C.G. S.X.
0.02 5e-3 44 Glycine max Gma.6234.2.S1_at BE346445 - - 1e+0 At3g17160 unknown protein C.G. S.X.
0.55 2e-135 484 Oryza sativa Os06g0713800 AK059671.1 - Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) 6e-2 At4g36780 transcription regulator C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.37347.1.A1_at CV255651 hypothetical protein - 2e-39 At3g05780 LON3 (LON PROTEASE 3) C.G. S.X.
0.73 0 1467 Triticum aestivum Ta.10281.1.S1_at BQ169398 - - 4e-2 At4g25000 AMY1 (ALPHA-AMYLASE-LIKE) C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1613760_at CF204137.1 - - 1e+0 At5g41030 TCP family transcription factor, putative C.G. S.X.
0.42 1e-74 280 Zea mays Zm.54.1.S1_at L25805.1 alpha-amylase - 3e-3 At4g25000 AMY1 (ALPHA-AMYLASE-LIKE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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