Gene omics information

Query gene ID	Contig704_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig704_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.55	72.0	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	S.X.	H.G.	Please select
0.44	58.9	HW01K06u_s_at	HW01K06u	-	-	3e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.05	4.1	Contig7528_s_at	Contig7528	-	-	1e-2	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.04	3.4	HK04G05r_at	HK04G05r	-	-	7e-1	At2g40935	unknown protein	S.X.	H.G.	Please select
0.03	2.6	Contig23909_at	Contig23909	-	-	4e+0	At3g56250	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.4	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.4	99.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
19.3	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
17.3	99.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.3	99.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.3	99.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.3	99.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.3	99.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.2	99.2	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1578	Contig704_x_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	C.G.	S.X.	Please select
0.88	0	1191	Contig603_at	Contig603	-	-	7e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.62	0	803	Contig444_at	Contig444	-	-	2e+0	At5g05550	transcription factor	C.G.	S.X.	Please select
0.72	0	755	Contig152_at	Contig152	-	-	5e-1	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.56	7e-143	506	Contig970_at	Contig970	-	-	9e-2	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.44	1e-107	389	Contig61_s_at	Contig61	-	-	5e-3	At3g06780	glycine-rich protein	C.G.	S.X.	Please select
0.42	1e-104	379	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	C.G.	S.X.	Please select
0.32	3e-65	248	Contig553_s_at	Contig553	-	-	4e+0	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.14	1e-14	79	Contig4725_s_at	Contig4725	-	-	2e-1	At4g39820	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At1g15140	838079	oxidoreductase NAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity;P:unknown;C:thylakoid, chloroplast, chloroplast stroma, chloroplast envelope;BOPFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	40	Glycine max	GmaAffx.83715.1.S1_at	BI785710	-	-	7e-2	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.40	2e-57	224	Oryza sativa	Os10g0150400	CF308064	-	Protein of unknown function DUF1210 family protein	2e+0	At5g14340	AtMYB40 (myb domain protein 40)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.205750.1.S1_at	pmrna11351	hypothetical protein	-	2e+0	At1g29465	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	720	Triticum aestivum	TaAffx.128643.6.S1_at	CK218028	-	-	2e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1612884_at	CA810969	-	-	4e+0	At3g24513	-	C.G.	S.X.	Please select
0.25	6e-35	147	Zea mays	Zm.7164.1.A1_at	BM380341	proline-rich protein	-	8e+0	At5g44894	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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