Gene omics information

Query gene ID	Contig7030_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.60	77.3	Contig9331_s_at	Contig9331	-	-	2e-2	At5g41190	-	S.X.	H.G.	Please select
0.33	42.6	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	S.X.	H.G.	Please select
0.23	26.1	Contig15096_s_at	Contig15096	-	-	2e-1	At5g51720	unknown protein	S.X.	H.G.	Please select
0.21	22.6	Contig10110_s_at	Contig10110	-	-	4e-4	At4g29870	-	S.X.	H.G.	Please select
0.19	19.6	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	S.X.	H.G.	Please select
0.19	19.6	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.2	99.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1	99.2	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.1	99.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.1	99.1	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.5	98.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-10	67	Contig16219_at	Contig16219	-	-	5e-7	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	2e-3	44	Contig12515_at	Contig12515	-	-	2e-1	At2g35110	GRL (GNARLED)	C.G.	S.X.	Please select
0.02	3e-2	40	baak3a05_s_at	baak3a05	-	-	5e+0	At4g18425	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	HVSMEn0019D12r2_s_at	HVSMEn0019D12r2	-	-	4e+0	At5g66815	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig8763_at	Contig8763	-	-	2e+0	At2g33855	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4147_at	Contig4147	-	-	5e-6	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig19851_at	Contig19851	-	-	1e-1	At1g72170	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7871_s_at	Contig7871	-	-	1e-9	At1g75370	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11458_at	Contig11458	-	-	6e-1	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	36	Arabidopsis thaliana	At1g15740	838143	leucine-rich repeat family protein	F:protein binding;P:unknown;C:cellular_component unknown;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.psHB007xG03f_at	PsAffx.psHB007xG03f	-	-	5e+0	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.36	4e-180	632	Oryza sativa	Os04g0503500	AK099404.1	-	Leucine-rich repeat, cysteine-containing subtypecontaining protein	5e-3	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-2	42	Populus trichocarpa	PtpAffx.32004.2.S1_a_at	AJ778820	hypothetical protein	-	9e-10	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	0	1540	Triticum aestivum	Ta.9255.1.S1_a_at	CK208205	-	-	2e-2	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Vitis vinifera	1612136_at	CF514670	-	-	3e-17	At5g55850	NOI	C.G.	S.X.	Please select
0.38	3e-140	498	Zea mays	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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