Gene omics information

Query gene ID	Contig7023_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig7023_at	Contig7023	-	-	3e+0	At5g65390	AGP7	S.X.	H.G.	Please select
0.59	75.8	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please select
0.53	69.7	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	S.X.	H.G.	Please select
0.50	66.9	Contig4791_at	Contig4791	-	-	4e+0	At5g45100	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.47	62.2	Contig398_s_at	Contig398	-	-	7e-13	At2g44050	COS1 (COI1 SUPPRESSOR1)	S.X.	H.G.	Please select
0.32	40.3	Contig665_s_at	Contig665	-	-	2e-20	At1g07820	histone H4	S.X.	H.G.	Please select
0.28	35.5	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	S.X.	H.G.	Please select
0.23	26.1	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.0	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
21.1	99.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
20.6	99.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.7	99.6	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.9	99.5	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.9	99.3	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.7	99.3	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.3	99.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.3	99.3	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.0	99.2	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-3	44	Contig819_at	Contig819	-	-	3e+0	At5g37770	TCH2 (TOUCH 2)	C.G.	S.X.	Please select
0.02	2e-3	44	Contig575_at	Contig575	-	-	4e-21	At1g56070	LOS1	C.G.	S.X.	Please select
0.02	2e-3	44	Contig223_x_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	2e-3	44	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig20523_at	Contig20523	-	-	1e+0	At5g65390	AGP7	C.G.	S.X.	Please select
0.01	1e-1	38	Contig13089_at	Contig13089	-	-	2e-41	At4g28000	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6799_at	Contig6799	cinnamoyl CoA reductase	-	8e-13	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12181_at	Contig12181	-	-	1e-1	At1g30660	nucleic acid binding	C.G.	S.X.	Please select
0.02	4e-1	36	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-3	46	Glycine max	PsAffx.C29000031_at	PsAffx.C29000031	-	-	3e+0	At4g18620	-	C.G.	S.X.	Please select
0.53	0	821	Oryza sativa	Os.49082.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-10	67	Populus trichocarpa	Ptp.5438.1.S1_at	CK106216	hypothetical protein	-	1e-14	At1g80600	WIN1 (HOPW1-1-INTERACTING 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	2056	Triticum aestivum	Ta.5321.1.S1_at	CA666614	-	-	3e+0	At5g65390	AGP7	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1607791_at	CB972439	hypothetical protein LOC100254056	-	5e-1	At4g01790	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related	C.G.	S.X.	Please select
0.47	6e-52	204	Zea mays	Zm.13440.1.S1_at	BM379142	-	-	3e+0	At5g65390	AGP7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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