Gene omics information

Query gene ID	Contig7012_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	98.9	Contig7012_at	Contig7012	-	-	6e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig11772_at	Contig11772	-	-	1e-31	At1g21065	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig634_at	Contig634	hypothetical LOC548258	-	7e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.35	45.1	HX01F12w_at	HX01F12w	-	-	5e+0	At5g18920	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig2411_at	Contig2411	-	-	2e-2	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please select
0.23	26.1	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	S.X.	H.G.	Please select
0.22	24.2	Contig11690_at	Contig11690	-	-	9e-13	At4g09810	transporter-related	S.X.	H.G.	Please select
0.21	22.6	HA12K13u_s_at	HA12K13u	-	-	2e-19	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select
0.15	14.1	Contig11410_at	Contig11410	-	-	4e-1	At5g47150	YDG/SRA domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.6	99.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
8.1	98.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
5.1	97.3	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.6	96.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	8e-7	54	Contig13932_at	Contig13932	-	-	3e-1	At3g29170	unknown protein	C.G.	S.X.	Please select
0.05	3e-6	52	Contig13385_s_at	Contig13385	-	-	4e-1	At1g63055	unknown protein	C.G.	S.X.	Please select
0.06	3e-6	52	HU11M19u_at	HU11M19u	-	-	4e+0	At4g40011	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig6334_at	Contig6334	-	-	6e-57	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig3057_s_at	Contig3057	-	-	8e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.03	2e-1	36	Contig24882_at	Contig24882	-	-	9e-1	At3g09032	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig15196_at	Contig15196	-	-	3e-9	At5g03880	electron carrier	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13588_at	Contig13588	-	-	1e-1	At3g58470	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.03	2e-1	36	Contig8916_at	Contig8916	-	-	1e+0	At4g39100	SHL1 (short life)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At1g57730	842148	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.22843.2.S1_at	CB374890	-	-	1e-2	At3g52480	unknown protein	C.G.	S.X.	Please select
0.36	3e-55	216	Oryza sativa	Os03g0206400	AK066494.1	-	Conserved hypothetical protein	1e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.206124.1.S1_at	pmrna12146	hypothetical protein	-	4e+0	At3g57500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	3e-137	488	Triticum aestivum	TaAffx.8112.1.S1_x_at	BQ801783	-	-	2e+1	At4g32930	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.04	6e-1	34	Zea mays	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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