Gene omics information

Query gene ID	Contig6981_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.50	66.9	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	S.X.	H.G.	Please select
0.38	49.5	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.35	45.1	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	S.X.	H.G.	Please select
0.25	28.9	Contig4901_s_at	Contig4901	-	-	5e+0	At5g01380	transcription factor	S.X.	H.G.	Please select
0.22	24.2	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.1	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
28.1	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.2	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-5	50	Contig5610_at	Contig5610	-	-	1e-2	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.11	2e-5	50	Contig11107_at	Contig11107	-	-	7e-4	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig24757_at	Contig24757	-	-	2e-37	At5g24850	CRY3 (cryptochrome 3)	C.G.	S.X.	Please select
0.02	1e+0	34	rbags22m24_s_at	rbags22m24	-	-	2e-2	At2g30360	SIP4 (SOS3-INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.02	1e+0	34	HV_CEa0004H12r2_at	HV_CEa0004H12r2	-	-	1e+0	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16015_at	Contig16015	-	-	3e-2	At2g23050	NPY4 (NAKED PINS IN YUC MUTANTS 4)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig10496_at	Contig10496	-	-	1e-17	At1g18070	EF-1-alpha-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Contig7419_at	Contig7419	-	-	2e-9	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig2724_s_at	Contig2724	-	-	1e-18	At2g35840	sucrose-phosphatase 1 (SPP1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	4e-5	50	Arabidopsis thaliana	At4g00170	828017	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-12	75	Glycine max	Gma.4790.1.S1_at	BM270023	-	-	5e-23	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.50	2e-135	484	Oryza sativa	Os08g0155100	AK069865.1	-	Major sperm protein domain containing protein	1e-8	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-9	65	Populus trichocarpa	PtpAffx.203016.1.S1_at	pmrna5965	hypothetical protein	-	7e-10	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	0	1483	Triticum aestivum	Ta.3084.1.S1_at	BQ166296	vesicle-associated membrane protein-associated protein	-	6e-1	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1620743_at	CF610054	hypothetical protein LOC100241913	-	4e-1	At5g47180	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.40	1e-105	383	Zea mays	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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