Gene omics information

Query gene ID	Contig6954_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6954_at	Contig6954	-	-	5e-1	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	S.X.	H.G.	Please select
0.55	72.0	Contig10928_at	Contig10928	-	-	3e-8	At3g50530	CRK (CDPK-related kinase)	S.X.	H.G.	Please select
0.50	66.9	Contig7876_at	Contig7876	-	-	3e-2	At1g13380	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig17787_at	Contig17787	-	-	6e-1	At3g62620	sucrose-phosphatase-related	S.X.	H.G.	Please select
0.42	55.2	Contig1126_s_at	Contig1126	-	-	7e+0	At5g40980	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig9445_at	Contig9445	-	-	3e-4	At1g12770	EMB1586 (embryo defective 1586)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.0	100.0	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
32.4	99.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.5	99.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
22.0	99.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.3	99.7	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.9	99.7	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.1	99.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
17.3	99.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.1	99.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
13.4	99.4	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	686	Contig6953_at	Contig6953	-	-	3e+0	At5g24440	CID13 (CTC-Interacting Domain 13)	C.G.	S.X.	Please select
0.03	3e-4	46	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	C.G.	S.X.	Please select
0.02	3e-4	46	Contig12632_at	Contig12632	-	-	2e-1	At1g69700	ATHVA22C	C.G.	S.X.	Please select
0.02	1e-3	44	Contig6056_s_at	Contig6056	-	-	7e-19	At3g13670	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig12717_at	Contig12717	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig9252_at	Contig9252	-	-	2e-47	At4g38620	MYB4	C.G.	S.X.	Please select
0.03	4e-3	42	Contig13490_at	Contig13490	-	-	4e-10	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig11503_at	Contig11503	-	-	2e+0	At4g03030	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Contig1784_at	Contig1784	-	-	4e-2	At3g46660	UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At3g17330	820996	ECT6 (evolutionarily conserved C-terminal region 6)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	GmaAffx.49621.1.S1_at	BE805566	-	-	3e-1	At5g06890	-	C.G.	S.X.	Please select
0.06	4e-22	107	Oryza sativa	OsAffx.12568.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	9e-13	75	Populus trichocarpa	PtpAffx.204772.1.S1_at	pmrna9397	hypothetical protein	-	1e-25	At2g14210	AGL44 (AGAMOUS-LIKE 44)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-12	73	Triticum aestivum	TaAffx.1124.1.S1_at	BJ233977	-	-	1e+0	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1607668_at	CF515837	hypothetical protein LOC100255062	-	4e+0	At4g27170	2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4	C.G.	S.X.	Please select
0.06	1e-15	83	Zea mays	Zm.524.1.S1_at	AF112149.1	MADS box protein 2	-	6e-17	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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