Gene omics information

Query gene ID	Contig6952_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.8	Contig6952_at	Contig6952	-	-	4e-5	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	S.X.	H.G.	Please select
0.68	85.1	Contig11320_s_at	Contig11320	-	-	1e+0	At5g11090	serine-rich protein-related	S.X.	H.G.	Please select
0.68	85.1	Contig11410_at	Contig11410	-	-	4e-1	At5g47150	YDG/SRA domain-containing protein	S.X.	H.G.	Please select
0.66	81.5	Contig7600_at	Contig7600	-	-	2e-1	At5g41570	WRKY24	S.X.	H.G.	Please select
0.65	81.4	Contig2867_at	Contig2867	-	-	8e-14	At5g01320	pyruvate decarboxylase, putative	S.X.	H.G.	Please select
0.64	80.9	Contig3004_at	Contig3004	-	-	1e-75	At3g14290	PAE2	S.X.	H.G.	Please select
0.63	80.3	Contig11690_at	Contig11690	-	-	9e-13	At4g09810	transporter-related	S.X.	H.G.	Please select
0.63	80.3	HA12K13u_s_at	HA12K13u	-	-	2e-19	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select
0.61	78.7	Contig12200_at	Contig12200	-	-	1e-23	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	S.X.	H.G.	Please select
0.60	77.3	HA12K13u_at	HA12K13u	-	-	2e-19	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.4	96.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.4	96.6	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-105	381	EBma01_SQ005_P22_s_at	EBma01_SQ005_P22	-	-	5e-1	At3g22235	-	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4748_at	Contig4748	-	-	2e-2	At1g76400	ribophorin I family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig26619_at	Contig26619	-	-	9e-1	At5g17280	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4748_s_at	Contig4748	ribophorin I	-	2e-2	At1g76400	ribophorin I family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8039_at	Contig8039	-	-	2e-7	At5g17570	tatD-related deoxyribonuclease family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14818_at	Contig14818	-	-	8e-1	Atmg00120	-	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEa0001M19r2_at	HVSMEa0001M19r2	-	-	4e+0	At4g34790	auxin-responsive family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13553_at	Contig13553	-	-	9e-6	At4g21192	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11073_at	Contig11073	-	-	2e+0	At4g37409	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-5	50	Arabidopsis thaliana	At5g08080	830702	SYP132 (SYNTAXIN OF PLANTS 132)	member of SYP13 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-1	38	Glycine max	GmaAffx.57881.1.S1_at	BI498083	-	-	8e-3	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.65	0	926	Oryza sativa	Os07g0164300	AK099351.1	-	Syntaxin, N-terminal domain containing protein	1e-11	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	4e-12	73	Populus trichocarpa	PtpAffx.58146.1.S1_at	CV261342	hypothetical protein	-	6e-63	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	1560	Triticum aestivum	Ta.3207.2.S1_a_at	CD889824	-	-	4e-5	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.12	1e-17	89	Vitis vinifera	1619882_at	CF604338	hypothetical protein LOC100265088	-	9e-17	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.29	5e-83	307	Zea mays	Zm.3781.1.S1_at	CD447284	syntaxin 132	-	3e-4	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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