Gene omics information

Query gene ID	Contig6946_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	S.X.	H.G.	Please select
0.71	87.1	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	S.X.	H.G.	Please select
0.67	84.7	Contig7149_at	Contig7149	-	-	7e-1	At1g04690	KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)	S.X.	H.G.	Please select
0.67	84.7	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	S.X.	H.G.	Please select
0.50	66.9	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.8	99.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.8	99.4	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.3	99.3	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.7	99.0	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.9	98.9	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.4	98.8	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.4	98.8	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.3	98.8	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.3	98.8	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-28	127	Contig5771_at	Contig5771	-	-	1e-2	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.17	4e-28	125	AJ303355_at	AJ303355	-	-	1e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.04	6e-15	81	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	C.G.	S.X.	Please select
0.07	6e-9	61	Contig12811_at	Contig12811	-	-	3e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.02	5e-6	52	Contig15670_at	Contig15670	-	-	5e-1	At2g38090	myb family transcription factor	C.G.	S.X.	Please select
0.03	2e-5	50	Contig7628_at	Contig7628	-	-	3e-12	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig11116_at	Contig11116	-	-	9e-1	At3g12150	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig3047_s_at	Contig3047	-	-	1e-2	At2g46960	CYP709B1	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14050_at	Contig14050	-	-	4e-4	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-5	52	Arabidopsis thaliana	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-3	44	Glycine max	Gma.593.3.S1_a_at	CA801787	MYB transcription factor MYB173 /// MYB transcription factor MYB176	-	6e-12	At1g74840	myb family transcription factor	C.G.	S.X.	Please select
0.34	2e-52	208	Oryza sativa	Os01g0192300	AK062458.1	-	I-box binding factor (Fragment)	6e-2	At3g16350	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-3	44	Populus trichocarpa	PtpAffx.208310.1.S1_at	pmrna16528	hypothetical protein	-	3e-19	At1g70000	DNA-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	5e-122	438	Triticum aestivum	Ta.4108.1.S1_x_at	BJ259031	-	-	3e-7	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.04	3e-9	61	Vitis vinifera	1614932_at	CF515425	hypothetical protein LOC100255200	-	3e-8	At5g05790	myb family transcription factor	C.G.	S.X.	Please select
0.11	2e-14	79	Zea mays	Zm.7675.1.A1_at	BM379874	hypothetical protein LOC100216850	-	2e-1	At5g01200	myb family transcription factor	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage