Gene omics information

Query gene ID	Contig6937_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig6937_at	Contig6937	-	-	2e+0	At1g45145	ATTRX5	S.X.	H.G.	Please select
0.50	66.9	Contig7023_at	Contig7023	-	-	3e+0	At5g65390	AGP7	S.X.	H.G.	Please select
0.32	40.3	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	S.X.	H.G.	Please select
0.27	32.1	Contig7768_at	Contig7768	-	-	8e-25	At2g45770	CPFTSY	S.X.	H.G.	Please select
0.20	21.1	Contig15355_at	Contig15355	-	-	5e+0	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	S.X.	H.G.	Please select
0.07	5.8	Contig5792_at	Contig5792	-	-	2e+0	At2g31730	ethylene-responsive protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
83.6	100.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
83.0	100.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
60.1	100.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
42.2	99.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
31.9	99.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.4	99.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.1	99.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.1	99.6	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	4e-169	593	Contig6938_at	Contig6938	-	-	1e+0	At1g45145	ATTRX5	C.G.	S.X.	Please select
0.46	7e-115	412	HU12N23u_s_at	HU12N23u	-	-	5e-1	At1g45145	ATTRX5	C.G.	S.X.	Please select
0.02	3e-6	52	Contig2736_s_at	Contig2736	-	-	3e-4	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	C.G.	S.X.	Please select
0.06	2e-4	46	Contig12584_s_at	Contig12584	-	-	8e-1	At3g15540	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	C.G.	S.X.	Please select
0.04	7e-4	44	HT07P04u_at	HT07P04u	-	-	3e-3	At2g19570	CDA1 (CYTIDINE DEAMINASE 1)	C.G.	S.X.	Please select
0.05	3e-3	42	Contig20845_at	Contig20845	-	-	5e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	C.G.	S.X.	Please select
0.05	1e-2	40	EBpi01_SQ004_D06_s_at	EBpi01_SQ004_D06	-	-	6e+0	At1g54870	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select
0.04	1e-2	40	Contig13264_at	Contig13264	-	-	2e+0	At3g55860	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig11170_at	Contig11170	-	-	7e+0	At4g21740	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At1g45145	841082	ATTRX5	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.psML009xC18f_at	PsAffx.psML009xC18f	-	-	6e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.33	1e-20	101	Oryza sativa	OsAffx.16673.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	8e-3	42	Populus trichocarpa	PtpAffx.204168.1.S1_at	pmrna8214	hypothetical protein	-	5e-1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	9e-73	274	Triticum aestivum	Ta.9401.2.S1_x_at	CA639919	-	-	4e+0	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620397_at	CD797931	hypothetical protein LOC100256137	-	1e-6	At4g12850	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please select
0.29	1e-20	99	Zea mays	Zm.18259.1.A1_x_at	CN844705	B12D protein	-	2e+1	At5g45775	60S ribosomal protein L11 (RPL11D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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