Gene omics information

Query gene ID	Contig6931_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig6931_at	Contig6931	-	-	8e-1	At2g04480	unknown protein	S.X.	H.G.	Please select
0.56	74.3	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.38	49.5	Contig17722_at	Contig17722	-	-	4e+0	At5g07090	40S ribosomal protein S4 (RPS4B)	S.X.	H.G.	Please select
0.30	37.0	Contig16318_at	Contig16318	-	-	7e-2	At3g56790	RNA splicing factor-related	S.X.	H.G.	Please select
0.23	26.1	Contig4358_at	Contig4358	-	-	7e-5	At5g61500	ATG3	S.X.	H.G.	Please select
0.22	24.2	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	S.X.	H.G.	Please select
0.15	14.1	Contig25736_at	Contig25736	-	-	1e+0	At2g46690	auxin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.8	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
40.5	99.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.9	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.6	99.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.7	99.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.1	99.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.5	99.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
8.5	98.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-7	57	Contig19958_at	Contig19958	-	-	4e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.04	2e-6	54	HVSMEi0014F04r2_at	HVSMEi0014F04r2	-	-	4e+0	At2g07779	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	44	Contig3998_at	Contig3998	-	-	3e-3	At5g33370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	9e-2	38	Contig12400_at	Contig12400	-	-	3e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig13834_at	Contig13834	-	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.01	4e-1	36	Contig13728_at	Contig13728	-	-	5e-1	At5g24313	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig15503_at	Contig15503	-	-	1e+0	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select
0.03	4e-1	36	Contig15331_at	Contig15331	-	-	1e-2	At2g42990	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12341_at	Contig12341	-	-	9e-7	At1g54610	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At2g04480	814988	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	HgAffx.6302.1.S1_at	CB825909	-	-	5e+0	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please select
0.54	1e-176	621	Oryza sativa	Os.5727.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-2	40	Populus trichocarpa	PtpAffx.2597.1.S1_at	CV236418	-	-	1e-5	At3g16370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1550	Triticum aestivum	Ta.10088.1.S1_at	CK213077	-	-	3e+0	At2g36355	unknown protein	C.G.	S.X.	Please select
0.07	6e-8	57	Vitis vinifera	1607341_at	CB970018	hypothetical protein LOC100242887	-	1e-8	At3g16370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.25	2e-33	143	Zea mays	Zm.4792.1.S1_at	CO524397	hypothetical protein LOC100216840	-	3e-1	At1g53910	RAP2.12	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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