Gene omics information

Query gene ID	Contig6905_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	68.3	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.92	98.4	HW08B21u_s_at	HW08B21u	-	-	1e+1	At5g23903	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig15424_at	Contig15424	-	-	2e+1	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	S.X.	H.G.	Please select
0.50	66.9	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select
0.46	61.0	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.4	99.6	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.8	99.6	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.9	99.5	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.5	99.5	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.0	99.4	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.2	99.4	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.0	99.3	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.1	99.2	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.4	99.0	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.5	98.8	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-129	460	Contig6904_at	Contig6904	-	-	3e-41	At3g11670	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig6791_at	Contig6791	-	-	2e-11	At1g18270	ketose-bisphosphate aldolase class-II family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig6570_at	Contig6570	-	-	1e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig4931_at	Contig4931	-	-	1e-22	At1g75850	VPS35B (VPS35 HOMOLOG B)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig3750_at	Contig3750	-	-	2e+0	At3g25740	MAP1B (METHIONINE AMINOPEPTIDASE 1C)	C.G.	S.X.	Please select
0.02	5e+0	30	Contig9686_at	Contig9686	-	-	9e-16	At3g10350	anion-transporting ATPase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig16453_at	Contig16453	-	-	7e-1	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig8447_s_at	Contig8447	-	-	8e-8	At2g16950	TRN1 (TRANSPORTIN 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig5723_at	Contig5723	-	-	5e-3	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e+0	32	Arabidopsis thaliana	At4g19620	827704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-1	34	Glycine max	GmaAffx.90029.1.S1_at	CF805754	-	-	3e-7	At3g18360	VQ motif-containing protein	C.G.	S.X.	Please select
0.12	2e-15	83	Oryza sativa	Os11g0158400	AK102797.1	-	Digalactosyldiacylglycerol synthase 1	5e-37	At3g11670	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Populus trichocarpa	Ptp.1010.1.A1_at	CK090040	hypothetical protein	-	2e-8	At1g51140	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	6e-106	383	Triticum aestivum	TaAffx.3722.1.S1_at	CA685523	-	-	3e-29	At3g11670	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	C.G.	S.X.	Please select
0.08	2e-1	34	Vitis vinifera	1621097_at	CB977742	hypothetical protein LOC100259167	-	2e+0	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.05	1e+0	32	Zea mays	Zm.8739.1.A1_at	BM334364	-	-	8e-1	At3g50300	transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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