Gene omics information

Query gene ID	Contig6884_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.67	84.7	Contig19726_at	Contig19726	-	-	3e-4	At2g18410	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig8374_at	Contig8374	-	-	5e-1	At5g62900	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please select
0.50	66.9	Contig15978_at	Contig15978	-	-	4e-1	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	S.X.	H.G.	Please select
0.43	56.4	Contig12918_at	Contig12918	-	-	3e+1	At5g02280	synbindin, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.1	98.4	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.1	98.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.9	97.9	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.8	97.8	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1413	Contig6884_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.56	0	866	Contig6885_at	Contig6885	-	-	5e-14	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.53	3e-74	278	HK04M02r_at	HK04M02r	-	-	2e-1	At2g42900	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig4618_at	Contig4618	-	-	1e-27	At3g55360	CER10	C.G.	S.X.	Please select
0.02	2e-1	36	Contig11375_at	Contig11375	-	-	4e-2	At1g51700	ADOF1	C.G.	S.X.	Please select
0.02	7e-1	34	Contig18323_at	Contig18323	-	-	9e-2	At2g37660	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.02	7e-1	34	Contig13672_at	Contig13672	-	-	3e+0	At3g14030	-	C.G.	S.X.	Please select
0.02	7e-1	34	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig15047_at	Contig15047	-	-	3e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-5	48	Arabidopsis thaliana	At4g34100	829556	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-12	73	Glycine max	Gma.3249.1.S1_at	BQ298433	-	-	9e-21	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.16	2e-59	230	Oryza sativa	Os06g0639000	AK059723.1	-	Conserved hypothetical protein	5e-9	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-10	67	Populus trichocarpa	Ptp.3492.1.S1_s_at	CV239474	hypothetical protein	-	2e-6	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	636	Triticum aestivum	Ta.23286.1.S1_at	CA656009	-	-	3e-8	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.10	8e-12	69	Vitis vinifera	1607689_at	CF203350.1	-	-	3e-8	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.16	1e-51	202	Zea mays	Zm.2007.1.A1_at	AY105117.1	-	-	2e-11	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage