CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6874_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig6874_at Contig6874 - - 8e+0 At5g14360 ubiquitin family protein S.X. H.G.
0.67 84.7 Contig9110_at Contig9110 - - 2e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.67 84.7 Contig4933_at Contig4933 - - 7e-1 At4g33145 unknown protein S.X. H.G.
0.50 66.9 Contig7320_at Contig7320 - - 2e-1 At1g26690 emp24/gp25L/p24 family protein S.X. H.G.
0.33 42.6 Contig1628_at Contig1628 - - 4e-8 At1g69180 CRC (CRABS CLAW) S.X. H.G.
0.19 19.6 Contig4415_at Contig4415 - - 3e-1 At2g18490 zinc finger (C2H2 type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.1 99.6 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.3 99.6 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
14.7 99.5 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.3 99.5 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.1 99.4 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.0 99.4 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
10.0 99.1 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.8 99.1 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
9.2 99.0 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.5 98.8 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-109 395 HA24C19r_s_at HA24C19r - - 2e+0 At3g52740 unknown protein C.G. S.X.
0.02 4e-3 42 Contig7351_at Contig7351 - - 8e-1 At5g56170 - C.G. S.X.
0.03 3e-1 36 Contig5554_at Contig5554 - - 3e+0 At5g26620 unknown protein C.G. S.X.
0.02 3e-1 36 Contig5553_at Contig5553 - - 2e+0 At4g15955 epoxide hydrolase-related C.G. S.X.
0.01 1e+0 34 Contig8057_at Contig8057 - - 1e-36 At3g13235 ubiquitin family protein C.G. S.X.
0.02 1e+0 34 Contig9283_at Contig9283 - - 1e-11 At5g16940 carbon-sulfur lyase C.G. S.X.
0.02 1e+0 34 Contig7677_at Contig7677 - - 2e-15 At3g23490 CYN (CYANASE) C.G. S.X.
0.01 4e+0 32 Contig8330_at Contig8330 - - 2e-13 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative C.G. S.X.
0.02 4e+0 32 Contig2808_at Contig2808 - - 2e+0 At5g52740 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At5g14360 831287 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PFMO - - - C.G. S.X.
0.03 7e-1 36 Glycine max Gma.6595.1.S1_at BM309622 - - 2e-1 At1g51600 TIFY2A C.G. S.X.
0.39 1e-77 291 Oryza sativa Os07g0645000 BI802078 - Allergen V5/Tpx-1 related family protein 3e-2 At5g19250 unknown protein C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.5944.1.A1_at CV228432 hypothetical protein - 3e-4 At5g19250 unknown protein C.G. S.X.
0.66 0 1061 Triticum aestivum Ta.9440.1.S1_at BJ283686 - - 8e+0 At4g27900 - C.G. S.X.
0.04 1e-2 40 Vitis vinifera 1617390_at CF372466 - - 2e+0 At5g20100 unknown protein C.G. S.X.
0.44 5e-58 224 Zea mays Zm.18043.1.A1_at AY106689.1 GPI-anchored protein At5g19240 - 3e-1 At3g27270 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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