Gene omics information

Query gene ID	Contig6865_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6865_at	Contig6865	-	-	2e-7	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	S.X.	H.G.	Please select
0.60	77.3	Contig5475_at	Contig5475	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.36	47.1	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.31	38.6	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.31	38.6	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	S.X.	H.G.	Please select
0.16	15.3	Contig17511_at	Contig17511	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
81.7	100.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
63.7	100.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
55.7	100.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
44.8	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.4	99.6	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.4	99.6	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
12.8	99.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.8	99.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.1	99.2	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2627	Contig6865_x_at	Contig6865	-	-	2e-7	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please select
0.32	9e-116	416	HVSMEk0016H05r2_at	HVSMEk0016H05r2	-	-	2e-1	At4g16460	unknown protein	C.G.	S.X.	Please select
0.25	1e-114	412	Contig6864_at	Contig6864	-	-	3e-5	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	C.G.	S.X.	Please select
0.24	2e-43	176	HA11E24u_at	HA11E24u	-	-	1e+1	At1g11905	-	C.G.	S.X.	Please select
0.08	2e-6	54	Contig9178_at	Contig9178	-	-	9e-6	At3g26125	CYP86C2	C.G.	S.X.	Please select
0.02	1e-3	44	HV_CEb0006P14r2_at	HV_CEb0006P14r2	-	-	3e-1	At5g46020	unknown protein	C.G.	S.X.	Please select
0.06	6e-3	42	rbah36p13_s_at	rbah36p13	-	-	1e+0	At4g35750	Rho-GTPase-activating protein-related	C.G.	S.X.	Please select
0.03	6e-3	42	HVSMEn0008D16r2_at	HVSMEn0008D16r2	-	-	6e-2	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig3439_s_at	Contig3439	-	-	4e+0	At3g60180	uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-7	57	Arabidopsis thaliana	At4g00360	828019	CYP86A2 (CYTOCHROME P450 86 A2)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-5	52	Glycine max	Gma.11025.1.S1_at	CD390437	-	-	2e-23	At2g45970	CYP86A8	C.G.	S.X.	Please select
0.66	0	1005	Oryza sativa	Os.8021.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	34	Populus trichocarpa	PtpAffx.211547.1.S1_at	pmrna22630	cytochrome P450	-	5e-42	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-137	490	Triticum aestivum	Ta.254.1.S1_s_at	AF123609.1	-	-	2e-2	At1g01600	CYP86A4	C.G.	S.X.	Please select
0.04	5e-2	38	Vitis vinifera	1621973_at	CF212141	-	-	8e+0	At5g24593	unknown protein	C.G.	S.X.	Please select
0.24	2e-85	315	Zea mays	Zm.16676.1.A1_at	CF650507	hypothetical protein LOC100192011	-	6e+0	At5g14690	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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