Gene omics information

Query gene ID	Contig6860_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.71	87.1	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.59	75.8	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please select
0.55	72.0	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please select
0.48	63.2	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.1	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.8	97.0	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-3	42	Contig255_at	Contig255	-	-	4e+0	At3g53670	unknown protein	C.G.	S.X.	Please select
0.03	6e-3	42	HVSMEh0099O01f_s_at	HVSMEh0099O01f	-	-	3e+0	At3g53670	unknown protein	C.G.	S.X.	Please select
0.02	6e-3	42	Contig3886_at	Contig3886	-	-	3e-2	At2g27510	ATFD3 (ferredoxin 3)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig18332_at	Contig18332	-	-	4e-8	At3g63310	glutamate binding	C.G.	S.X.	Please select
0.02	9e-2	38	Contig2320_s_at	Contig2320	-	-	1e+0	At5g60480	AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig8493_at	Contig8493	-	-	3e-5	At1g64640	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.01	9e-2	38	Contig6347_s_at	Contig6347	-	-	8e-4	At5g62390	ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)	C.G.	S.X.	Please select
0.01	9e-2	38	Contig6347_at	Contig6347	-	-	8e-4	At5g62390	ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5513_at	Contig5513	-	-	2e+0	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-4	46	Arabidopsis thaliana	At5g66815	836815	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-7	57	Glycine max	GmaAffx.6736.1.S1_at	BE802356	-	-	3e-1	At5g53710	unknown protein	C.G.	S.X.	Please select
0.43	1e-87	325	Oryza sativa	Os06g0232000	AB110192.1	-	Hypothetical protein	2e-4	At5g39570	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	38	Populus trichocarpa	PtpAffx.213281.1.S1_at	pmrna25974	hypothetical protein	-	1e-1	At5g66815	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1037	Triticum aestivum	Ta.22495.1.S1_a_at	CA675711	-	-	2e-1	At5g66815	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1621864_at	CD714855	-	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	C.G.	S.X.	Please select
0.23	8e-36	151	Zea mays	Zm.17271.1.A1_a_at	CF629105	hypothetical protein LOC100191540	-	6e-18	At5g52650	40S ribosomal protein S10 (RPS10C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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