Gene omics information

Query gene ID	Contig6826_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select
0.71	87.1	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.67	84.7	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.61	78.7	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.60	77.3	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	96.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	2e-144	510	Contig6824_at	Contig6824	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig11454_at	Contig11454	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10698_at	Contig10698	-	-	1e-17	At5g23410	-	C.G.	S.X.	Please select
0.04	4e-1	34	HVSMEb0011N20f_at	HVSMEb0011N20f	-	-	3e+0	At4g32030	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	32	Contig19511_at	Contig19511	-	-	8e+0	At4g27450	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig19422_at	Contig19422	-	-	5e+0	At3g14360	lipase class 3 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig1129_at	Contig1129	-	-	8e-8	At3g09480	histone H2B, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig7490_at	Contig7490	-	-	2e-17	At4g28480	DNAJ heat shock family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig5808_at	Contig5808	-	-	2e+0	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	34	Arabidopsis thaliana	At2g15535	816046	LCR10 (Low-molecular-weight cysteine-rich 10)	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-3	42	Glycine max	GmaAffx.86436.1.S1_at	BG237537	-	-	4e+0	At1g48953	unknown protein	C.G.	S.X.	Please select
0.14	5e-28	125	Oryza sativa	Os04g0643100	AK067501.1	-	-	9e-19	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.220093.1.S1_at	pmrna36408	hypothetical protein	-	6e-1	At3g44140	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	6e-82	303	Triticum aestivum	Ta.21235.2.A1_at	CA637498	-	-	1e-10	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1616472_at	CF405517	hypothetical protein LOC100260255	-	1e+0	At5g36140	CYP716A2	C.G.	S.X.	Please select
0.09	2e-5	48	Zea mays	Zm.1234.2.A1_at	AY105877.1	hypothetical protein LOC100193069	-	1e+1	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage