Gene omics information

Query gene ID	Contig6773_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig6773_at	Contig6773	-	-	5e-3	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	S.X.	H.G.	Please select
0.27	32.1	Contig4695_at	Contig4695	-	-	7e-1	At1g67950	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.26	30.4	Contig5865_at	Contig5865	-	-	2e+1	At5g04267	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	S.X.	H.G.	Please select
0.14	12.9	Contig13582_at	Contig13582	-	-	2e-4	At3g03690	UNE7 (unfertilized embryo sac 7)	S.X.	H.G.	Please select
0.06	4.8	Contig6632_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.1	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.6	99.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.0	99.6	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.0	99.4	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.3	99.3	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.4	99.2	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.1	99.1	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.4	99.0	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.8	98.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	40	Contig13837_at	Contig13837	-	-	5e-14	At1g77470	replication factor C 36 kDA, putative	C.G.	S.X.	Please select
0.01	4e-2	40	Contig20217_s_at	Contig20217	-	-	1e+0	At5g04045	Expressed protein	C.G.	S.X.	Please select
0.01	4e-2	40	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.01	4e-2	40	Contig6587_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4432_at	Contig4432	-	-	2e-4	At3g53460	CP29	C.G.	S.X.	Please select
0.01	6e-1	36	Contig14937_at	Contig14937	-	-	4e-2	At4g34880	amidase family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig2611_s_at	Contig2611	-	-	2e-13	At3g57490	40S ribosomal protein S2 (RPS2D)	C.G.	S.X.	Please select
0.01	6e-1	36	Contig103_s_at	Contig103	-	-	4e+0	At1g27820	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.01	6e-1	36	HZ36N03r_at	HZ36N03r	-	-	5e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	44	Arabidopsis thaliana	At3g20580	821605	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-4	48	Glycine max	GmaAffx.76107.1.S1_at	BE020159	-	-	3e-1	At4g16120	COBL7 (COBRA-LIKE 7)	C.G.	S.X.	Please select
0.68	0	1051	Oryza sativa	Os03g0301200	AK119578.1	-	COBRA-like protein 7 precursor	2e-5	At3g16860	COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	4e-1	38	Populus trichocarpa	PtpAffx.11535.6.S1_at	CX178705	hypothetical protein	-	2e+0	At5g28630	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	1832	Triticum aestivum	TaAffx.65012.1.S1_at	BG607332	-	-	6e-4	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	C.G.	S.X.	Please select
0.01	6e+0	32	Vitis vinifera	1621923_at	CF414969	hypothetical protein LOC100250874	-	1e-56	At1g70600	structural constituent of ribosome	C.G.	S.X.	Please select
0.08	1e-17	91	Zea mays	ZmAffx.720.1.A1_at	AI739909	hypothetical protein LOC100279563	-	2e-1	At1g11572	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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