Gene omics information

Query gene ID	Contig6757_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig6757_at	Contig6757	-	-	3e-4	At1g72550	tRNA synthetase beta subunit family protein	S.X.	H.G.	Please select
0.43	56.4	Contig6469_at	Contig6469	-	-	3e-37	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.40	53.1	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig9715_s_at	Contig9715	-	-	8e+0	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select
0.39	50.5	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.33	42.6	Contig1122_s_at	Contig1122	-	-	1e-22	At1g07790	HTB1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.5	98.2	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.7	97.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	648	Contig6758_at	Contig6758	-	-	1e+0	At3g13840	scarecrow transcription factor family protein	C.G.	S.X.	Please select
0.01	4e-2	40	Contig9974_at	Contig9974	-	-	2e-14	At1g26520	-	C.G.	S.X.	Please select
0.01	4e-2	40	Contig9973_at	Contig9973	-	-	7e+0	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select
0.01	6e-1	36	Contig13591_at	Contig13591	-	-	8e-47	At5g01230	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3456_s_at	Contig3456	-	-	8e-40	At4g25630	FIB2 (FIBRILLARIN 2)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3932_at	Contig3932	-	-	2e-3	At1g16230	syntaxin-related family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig22210_at	Contig22210	-	-	1e+0	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-4	48	Arabidopsis thaliana	At1g72550	843587	tRNA synthetase beta subunit family protein	F:phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:phenylalanine-tRNA ligase complex, cytoplasm;BOMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-19	99	Glycine max	Gma.2819.1.S1_at	BE821662	-	-	5e-33	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select
0.68	0	1554	Oryza sativa	Os05g0558900	AK101679.1	-	Phenylalanyl-tRNA synthetase beta chain (EC6.1.1.20) (Phenylalanine-- tRNA ligase beta chain)(PheRS) (HSPC173)	5e-6	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	5e-10	67	Populus trichocarpa	PtpAffx.83548.1.S1_at	CK091503	hypothetical protein	-	8e-19	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	0	1723	Triticum aestivum	Ta.2902.1.S1_x_at	CD871896	-	-	3e+0	At3g48510	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	38	Vitis vinifera	1620105_at	CB007928	-	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select
0.52	0	961	Zea mays	Zm.12166.1.A1_at	AY108056.1	phenylalanyl-tRNA synthetase beta chain	-	1e-3	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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