Gene omics information

Query gene ID	Contig6751_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.55	72.0	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.55	72.0	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.50	66.9	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	S.X.	H.G.	Please select
0.50	66.9	Contig835_s_at	Contig835	-	-	4e-6	At4g32260	ATP synthase family	S.X.	H.G.	Please select
0.36	47.1	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
80.2	100.0	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
53.0	100.0	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
44.9	99.9	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
40.8	99.9	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
22.1	99.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.9	99.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.8	99.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.4	99.6	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.3	99.6	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.3	99.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	5e-106	383	Contig6752_s_at	Contig6752	-	-	4e+0	At2g33845	DNA-binding protein-related	C.G.	S.X.	Please select
0.29	2e-77	287	AF474373_CDS-2_at	AF474373_CDS-2	-	-	3e-1	At1g52905	unknown protein	C.G.	S.X.	Please select
0.36	6e-44	176	Contig10150_at	Contig10150	-	-	8e-2	At3g12345	unknown protein	C.G.	S.X.	Please select
0.33	5e-38	157	Contig11396_at	Contig11396	-	-	4e+0	At2g46600	calcium-binding protein, putative	C.G.	S.X.	Please select
0.07	9e-3	40	Contig5269_x_at	Contig5269	-	-	5e+0	At5g25750	unknown protein	C.G.	S.X.	Please select
0.07	9e-3	40	Contig5269_s_at	Contig5269	-	-	5e+0	At5g25750	unknown protein	C.G.	S.X.	Please select
0.03	9e-3	40	Contig11237_at	Contig11237	-	-	2e-3	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	C.G.	S.X.	Please select
0.01	9e-3	40	Contig7226_at	Contig7226	-	-	2e-21	At3g54540	ATGCN4	C.G.	S.X.	Please select
0.02	4e-2	38	Contig6351_at	Contig6351	-	-	3e-4	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g04990	819659	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.29876.1.S1_at	AW202367	-	-	5e-2	At2g41225	unknown protein	C.G.	S.X.	Please select
0.23	2e-16	87	Oryza sativa	Os06g0110200	AK107973.1	-	Late embryogenesis abundant (LEA) group 1 familyprotein	1e+0	At4g11250	AGL52	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.218796.1.S1_x_at	pmrna34532	hypothetical protein	-	2e-1	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	4e-127	454	Triticum aestivum	TaAffx.110973.1.S1_at	CA649435	-	-	4e+0	At1g52200	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1618288_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.03	5e-4	44	Zea mays	Zm.12583.1.A1_at	AF527615.1	histone H1-like protein HON101	-	7e+0	At5g42000	ORMDL family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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