Gene omics information

Query gene ID	Contig6730_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.4	Contig6730_at	Contig6730	-	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig12545_at	Contig12545	-	-	1e-3	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.39	50.5	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.38	49.5	Contig18358_x_at	Contig18358	-	-	2e-1	At3g52380	CP33	S.X.	H.G.	Please select
0.37	47.9	Contig13555_at	Contig13555	-	-	4e-1	Atmg01290	-	S.X.	H.G.	Please select
0.32	40.3	Contig12451_at	Contig12451	-	-	1e+0	At1g76560	CP12-3	S.X.	H.G.	Please select
0.29	35.5	Contig26532_at	Contig26532	-	-	1e-1	At2g30710	RabGAP/TBC domain-containing protein	S.X.	H.G.	Please select
0.27	32.1	Contig8833_at	Contig8833	-	-	2e+0	At1g63855	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig7588_at	Contig7588	-	-	5e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	S.X.	H.G.	Please select
0.25	28.9	Contig11224_at	Contig11224	-	-	1e+1	At5g59720	HSP18.2 (heat shock protein 18.2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8	93.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-3	40	Contig14348_at	Contig14348	-	-	3e-3	At1g71692	AGL12 (AGAMOUS-LIKE 12)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig3684_at	Contig3684	-	-	2e+0	At4g24370	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	38	Contig17598_at	Contig17598	-	-	3e-1	At5g08050	-	C.G.	S.X.	Please select
0.01	6e-1	34	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig7135_at	Contig7135	-	-	4e-31	At2g41860	CPK14	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16060_at	Contig16060	-	-	4e-2	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig8690_at	Contig8690	-	-	2e-1	At3g61870	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig13572_at	Contig13572	-	-	4e+0	At5g12390	FIS1B (FISSION 1B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g10815	2745878	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	5e-19	95	Glycine max	Gma.7127.1.S1_at	BI320878	-	-	1e+0	At2g37410	ATTIM17-2	C.G.	S.X.	Please select
0.27	1e-41	171	Oryza sativa	Os.5575.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.11269.1.S1_at	CK087532	hypothetical protein	-	9e-1	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	674	Triticum aestivum	Ta.23783.1.S1_a_at	CD886943	-	-	3e-1	At1g20225	-	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1616090_at	CB342526	hypothetical protein LOC100264059	-	4e+0	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	C.G.	S.X.	Please select
0.25	8e-40	163	Zea mays	Zm.1512.1.A1_at	CF024605	CL16923_1 protein	-	2e+0	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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