Gene omics information

Query gene ID	Contig6728_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6728_at	Contig6728	-	-	6e-1	At5g23030	TET12 (TETRASPANIN12)	S.X.	H.G.	Please select
0.55	72.0	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.46	61.0	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig955_x_at	Contig955	-	-	4e+0	At5g20165	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig22222_at	Contig22222	-	-	1e+0	At5g64160	unknown protein	S.X.	H.G.	Please select
0.17	16.9	HM10J16r_at	HM10J16r	-	-	4e+0	At5g64400	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.8	99.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.5	99.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5	99.2	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.7	98.6	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
5.4	97.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-8	59	Contig7785_at	Contig7785	-	-	3e-14	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.12	2e-8	59	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.12	2e-8	59	Contig3054_s_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.03	8e-2	38	Contig16070_at	Contig16070	-	-	9e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.02	8e-2	38	Contig14263_at	Contig14263	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12717_at	Contig12717	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig1632_at	Contig1632	-	-	1e-2	At5g20560	beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.05	3e-1	36	Contig21080_at	Contig21080	-	-	5e+0	At5g46700	TRN2 (TORNADO 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10885_at	Contig10885	-	-	3e-7	At1g20370	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	36	Arabidopsis thaliana	At5g23030	832367	TET12 (TETRASPANIN12)	Member of TETRASPANIN family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	6e-11	69	Glycine max	GmaAffx.5232.1.S1_at	BM309521	-	-	2e-9	At5g60220	TET4 (TETRASPANIN4)	C.G.	S.X.	Please select
0.57	0	809	Oryza sativa	Os05g0122800	AK068516.1	-	CD9/CD37/CD63 antigen family protein	7e-1	At3g50550	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-2	42	Populus trichocarpa	PtpAffx.60606.2.A1_s_at	CV271130	-	-	2e-2	At3g18800	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	854	Triticum aestivum	Ta.25548.1.S1_at	CA653157	-	-	2e+0	At3g12090	TET6 (TETRASPANIN6)	C.G.	S.X.	Please select
0.08	2e-4	46	Vitis vinifera	1616444_at	CA817083	hypothetical protein LOC100260311	-	3e-9	At5g60220	TET4 (TETRASPANIN4)	C.G.	S.X.	Please select
0.28	1e-68	260	Zea mays	Zm.13616.1.A1_at	AY107497.1	senescence-associated protein	-	2e+0	At4g25315	Expressed protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage