Gene omics information

Query gene ID	Contig6718_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig6718_s_at	Contig6718	-	-	1e-8	At5g40550	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig11308_at	Contig11308	-	-	1e-13	At1g49430	LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)	S.X.	H.G.	Please select
0.67	84.7	Contig14233_at	Contig14233	-	-	5e-1	At5g17590	prothymosin alpha-related	S.X.	H.G.	Please select
0.57	74.9	Contig6866_at	Contig6866	-	-	1e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.38	49.5	Contig3301_s_at	Contig3301	-	-	7e-1	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	S.X.	H.G.	Please select
0.26	30.4	Contig2878_at	Contig2878	-	-	4e-1	At3g49630	2-oxoacid-dependent oxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.8	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
5.1	97.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
4.0	96.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.0	96.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-173	609	Contig6720_at	Contig6720	-	-	6e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	44	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig2454_at	Contig2454	phospholipid hydroperoxide glutathione peroxidase-like protein	-	5e-72	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.03	1e-3	44	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig8174_s_at	Contig8174	-	-	2e-12	At3g13550	FUS9 (FUSCA 9)	C.G.	S.X.	Please select
0.02	8e-2	38	Contig8174_at	Contig8174	-	-	2e-12	At3g13550	FUS9 (FUSCA 9)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig5584_at	Contig5584	-	-	8e-4	At3g20000	TOM40	C.G.	S.X.	Please select
0.02	8e-2	38	Contig10747_at	Contig10747	-	-	1e-6	At4g25225	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig18263_at	Contig18263	-	-	3e-3	At3g06200	guanylate kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-8	61	Arabidopsis thaliana	At5g40550	834053	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-13	77	Glycine max	GmaAffx.5182.2.S1_at	AW186428	-	-	4e-15	At3g27460	unknown protein	C.G.	S.X.	Please select
0.50	1e-142	508	Oryza sativa	Os.13552.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-15	85	Populus trichocarpa	Ptp.438.1.S1_at	CK317792	hypothetical protein	-	2e-18	At5g40550	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.88	0	1647	Triticum aestivum	Ta.9706.1.S1_a_at	BQ169555	-	-	3e-3	At5g40550	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.42	3e-127	454	Zea mays	Zm.18071.1.S1_at	CK849985	hypothetical protein LOC100273149	-	5e-5	At5g40550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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