CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6653_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.6 Contig6653_at Contig6653 - - 2e-17 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) S.X. H.G.
0.45 59.3 Contig9543_at Contig9543 - - 3e+0 At3g01200 AtRP2 (PPDK regulatory protein 2) S.X. H.G.
0.39 50.5 Contig4656_at Contig4656 - - 1e-3 At5g60570 kelch repeat-containing F-box family protein S.X. H.G.
0.38 49.5 Contig3197_at Contig3197 - - 1e-50 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) S.X. H.G.
0.37 47.9 Contig6164_s_at Contig6164 - - 5e-8 At5g53420 - S.X. H.G.
0.36 47.1 Contig2909_s_at Contig2909 - - 7e-1 At3g18295 unknown protein S.X. H.G.
0.36 47.1 HVSMEl0015K12f_at HVSMEl0015K12f - - 4e+0 At5g24370 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.35 45.1 Contig13799_at Contig13799 - - 2e-5 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) S.X. H.G.
0.34 43.6 Contig6012_at Contig6012 - - 6e-16 At3g62580 - S.X. H.G.
0.34 43.6 Contig3622_s_at Contig3622 aleurone specific protein - 2e-2 At3g46900 COPT2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.2 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.2 97.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7 96.9 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.2 96.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.5 95.1 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM440961 Stressed lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 0 850 HI05P18u_s_at HI05P18u - - 4e+0 At3g50695 unknown protein C.G. S.X.
0.19 2e-71 270 HB25C07r_x_at HB25C07r - - 2e+0 At5g61130 PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1) C.G. S.X.
0.01 5e-1 36 Contig3530_at Contig3530 - - 4e-37 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) C.G. S.X.
0.01 2e+0 34 Contig17540_at Contig17540 - - 5e-1 At5g10530 lectin protein kinase, putative C.G. S.X.
0.01 2e+0 34 Contig9170_at Contig9170 - - 1e-2 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.01 2e+0 34 EBes01_SQ004_G11_at EBes01_SQ004_G11 - - 4e+0 At5g42960 unknown protein C.G. S.X.
0.01 2e+0 34 Contig12961_at Contig12961 - - 1e-8 At5g57590 BIO1 (biotin auxotroph 1) C.G. S.X.
0.01 2e+0 34 Contig11699_at Contig11699 - - 2e-3 At5g05600 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 2e+0 34 Contig8554_at Contig8554 - - 2e-4 At2g26060 emb1345 (embryo defective 1345) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-17 91 Arabidopsis thaliana At5g12370 831112 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOB - - - C.G. S.X.
0.08 3e-1 38 Glycine max GmaAffx.19843.1.S1_at BU550809 - - 2e+0 At3g60966 protein binding / zinc ion binding C.G. S.X.
0.60 0 930 Oryza sativa Os12g0238100 AK064983.1 - Exocyst complex component Sec10 family protein 6e-40 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.22 5e-31 137 Populus trichocarpa PtpAffx.8033.1.S1_s_at CV233130 hypothetical protein - 1e-64 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.86 0 1530 Triticum aestivum Ta.3597.1.S1_at BQ166709 - - 1e-6 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.14 1e-15 83 Vitis vinifera 1620709_at CB918852 - - 1e-65 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.07 2e-18 93 Zea mays ZmAffx.202.1.A1_at AI670151 - - 1e+1 Atmg01080 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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