Gene omics information

Query gene ID	Contig6634_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6634_at	Contig6634	-	-	9e-4	At3g09470	-	S.X.	H.G.	Please select
0.91	98.1	Contig6633_at	Contig6633	-	-	4e+0	At4g17310	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig6632_s_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.44	58.9	Contig11836_at	Contig11836	-	-	6e-10	At1g22650	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	S.X.	H.G.	Please select
0.33	42.6	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	S.X.	H.G.	Please select
0.21	22.6	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.5	98.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.1	96.2	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
4.0	96.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig2402_s_at	Contig2402	-	-	2e-13	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig26172_at	Contig26172	-	-	1e+0	At1g56010	NAC1	C.G.	S.X.	Please select
0.01	4e-1	36	Contig15869_at	Contig15869	-	-	5e-1	At1g32240	KAN2 (KANADI 2)	C.G.	S.X.	Please select
0.02	4e-1	36	HZ40A08r_at	HZ40A08r	-	-	4e+0	At5g52965	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12044_at	Contig12044	-	-	1e-1	At3g61660	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig11176_at	Contig11176	-	-	3e-6	At2g25670	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig4172_at	Contig4172	-	-	2e-2	At3g52090	NRPB11	C.G.	S.X.	Please select
0.01	2e+0	34	Contig79_at	Contig79	-	-	1e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6721_at	Contig6721	-	-	5e-1	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-4	46	Arabidopsis thaliana	At3g09470	820104	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-9	63	Glycine max	Gma.798.1.S1_at	BE820706	-	-	2e-4	At3g09470	-	C.G.	S.X.	Please select
0.59	0	985	Oryza sativa	Os.37965.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-11	69	Populus trichocarpa	PtpAffx.206232.1.S1_at	pmrna12368	hypothetical protein	-	9e-22	At3g09470	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	0	646	Triticum aestivum	TaAffx.56790.1.S1_at	CA644275	-	-	3e-1	At3g09470	-	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1609869_at	CA815742	hypothetical protein LOC100253108	-	5e-6	At1g51560	FMN binding	C.G.	S.X.	Please select
0.02	2e+0	34	Zea mays	Zm.17705.1.A1_at	CK369749	hypothetical protein LOC100279520	-	2e+0	At4g18890	brassinosteroid signalling positive regulator-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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