Gene omics information

Query gene ID	Contig662_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	S.X.	H.G.	Please select
0.57	74.9	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	S.X.	H.G.	Please select
0.55	72.0	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	S.X.	H.G.	Please select
0.43	56.4	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig6963_at	Contig6963	-	-	5e-11	At5g02240	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select
0.26	30.4	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
7.3	98.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.2	98.5	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2	98.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.5	98.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.7	97.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	781	Contig629_at	Contig629	-	-	2e-1	At5g22240	OFP10	C.G.	S.X.	Please select
0.69	0	781	Contig629_s_at	Contig629	-	-	2e-1	At5g22240	OFP10	C.G.	S.X.	Please select
0.01	5e-2	38	Contig10268_at	Contig10268	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	C.G.	S.X.	Please select
0.03	2e-1	36	rbags1k23_at	rbags1k23	-	-	1e+0	Atmg01000	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig24376_at	Contig24376	-	-	6e+0	At5g59950	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select
0.01	8e-1	34	Contig3023_s_at	Contig3023	-	-	2e-1	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig21949_s_at	Contig21949	-	-	1e+0	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig21949_at	Contig21949	-	-	1e+0	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig20288_at	Contig20288	-	-	1e+0	At1g22970	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At5g22240	832284	OFP10	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	PsAffx.CL1Contig4_s_at	PsAffx.CL1Contig4	-	-	3e-1	At3g02080	40S ribosomal protein S19 (RPS19A)	C.G.	S.X.	Please select
0.20	1e-18	95	Oryza sativa	Os.16051.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.53702.1.S1_at	CK107259	hypothetical protein	-	9e-1	At5g51840	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	2e-58	226	Triticum aestivum	TaAffx.38567.1.A1_at	CK208365	-	-	1e+0	At3g01550	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1617317_at	CF414349	hypothetical protein LOC100257501	-	1e+0	At5g08240	unknown protein	C.G.	S.X.	Please select
0.05	2e-7	56	Zea mays	Zm.12480.1.A1_at	AI901944	hypothetical protein LOC100194202	-	4e-1	At4g15393	CYP702A5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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