Gene omics information

Query gene ID	Contig6619_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6619_at	Contig6619	-	-	2e-3	At5g51180	unknown protein	S.X.	H.G.	Please select
0.73	88.7	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig5753_at	Contig5753	-	-	3e-1	At1g04501	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig4747_at	Contig4747	-	-	2e+0	At2g05620	PGR5 (proton gradient regulation 5)	S.X.	H.G.	Please select
0.31	38.6	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig5257_at	Contig5257	-	-	1e+0	At4g00200	DNA binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	99.2	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.2	98.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.6	97.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.5	97.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	9e-7	54	Contig11479_s_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.16	9e-7	54	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.04	5e-2	38	EBed07_SQ002_I13_s_at	EBed07_SQ002_I13	-	-	8e-2	At2g31410	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig13141_at	Contig13141	-	-	1e-5	At4g25770	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Contig97_s_at	Contig97	translationally-controlled tumor protein homolog	-	2e-8	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig859_s_at	Contig859	-	-	7e-16	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.04	2e-1	36	Contig97_at	Contig97	-	-	2e-8	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig234_s_at	Contig234	-	-	3e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.02	8e-1	34	Contig17201_at	Contig17201	-	-	5e-1	At5g53850	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-3	44	Arabidopsis thaliana	At5g51180	835192	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.39172.1.S1_at	BM094230	-	-	2e-5	At1g12340	-	C.G.	S.X.	Please select
0.48	2e-94	347	Oryza sativa	Os08g0143700	AK106434.1	-	Protein of unknown function DUF676 domaincontaining protein	5e-5	At5g51180	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-6	54	Populus trichocarpa	PtpAffx.200312.1.S1_at	pmrna617	hypothetical protein	-	4e-11	At5g51180	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-3	44	Triticum aestivum	Ta.4973.1.S1_s_at	CD930503	-	-	1e-2	At4g25770	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1617986_at	CB343426	hypothetical protein LOC100257288	-	7e+0	At5g07510	GRP14	C.G.	S.X.	Please select
0.14	8e-4	44	Zea mays	Zm.4351.1.A1_at	AI861482	hypothetical protein LOC100191604	-	2e-1	At1g10040	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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