Gene omics information

Query gene ID	Contig6618_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.60	77.3	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.53	69.7	Contig15345_at	Contig15345	-	-	7e-3	At5g05070	zinc ion binding	S.X.	H.G.	Please select
0.35	45.1	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	S.X.	H.G.	Please select
0.21	22.6	Contig10922_at	Contig10922	-	-	3e-16	At3g48380	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.2	98.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.6	98.2	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	704	Contig6620_at	Contig6620	-	-	4e-1	At5g51180	unknown protein	C.G.	S.X.	Please select
0.79	0	704	Contig6620_s_at	Contig6620	-	-	4e-1	At5g51180	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig12552_s_at	Contig12552	-	-	1e-2	At4g25770	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	HW09E23u_at	HW09E23u	-	-	4e+0	At2g20690	lumazine-binding family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig12552_at	Contig12552	-	-	1e-2	At4g25770	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig14514_at	Contig14514	-	-	2e-1	At1g52320	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Contig11479_s_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Contig17791_at	Contig17791	-	-	2e-1	At1g67860	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At5g51180	835192	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-2	40	Glycine max	Gma.16546.1.S1_at	BI967995	-	-	4e-1	At5g51180	unknown protein	C.G.	S.X.	Please select
0.24	6e-48	192	Oryza sativa	Os08g0143700	AK106434.1	-	Protein of unknown function DUF676 domaincontaining protein	5e-5	At5g51180	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.210505.1.S1_at	pmrna20609	hypothetical protein	-	4e-1	At5g57910	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-3	42	Triticum aestivum	Ta.4973.2.S1_a_at	CA725648	-	-	5e-2	At4g25770	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1615521_at	CF209850	-	-	1e+0	At1g16022	unknown protein	C.G.	S.X.	Please select
0.05	3e-6	52	Zea mays	Zm.4351.1.A1_at	AI861482	hypothetical protein LOC100191604	-	2e-1	At1g10040	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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